Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00532

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00531 and H281DRAFT_00532 are separated by 177 nucleotidesH281DRAFT_00532 and H281DRAFT_00533 are separated by 64 nucleotides H281DRAFT_00531: H281DRAFT_00531 - hypothetical protein, at 596,428 to 597,186 _00531 H281DRAFT_00532: H281DRAFT_00532 - hypothetical protein, at 597,364 to 597,582 _00532 H281DRAFT_00533: H281DRAFT_00533 - ATP-dependent DNA helicase DinG, at 597,647 to 599,911 _00533 Position (kb) 597 598Strain fitness (log2 ratio) -2 -1 0 1at 596.783 kb on - strand, within H281DRAFT_00531at 596.866 kb on + strand, within H281DRAFT_00531at 596.951 kb on - strand, within H281DRAFT_00531at 597.190 kb on + strandat 597.206 kb on + strandat 597.206 kb on + strandat 597.206 kb on + strandat 597.238 kb on + strandat 597.238 kb on + strandat 597.238 kb on + strandat 597.239 kb on - strandat 597.241 kb on + strandat 597.241 kb on + strandat 597.250 kb on - strandat 597.270 kb on + strandat 597.276 kb on + strandat 597.572 kb on + strandat 597.572 kb on + strandat 597.573 kb on - strandat 598.064 kb on + strand, within H281DRAFT_00533at 598.064 kb on + strand, within H281DRAFT_00533at 598.065 kb on - strand, within H281DRAFT_00533at 598.071 kb on - strand, within H281DRAFT_00533at 598.156 kb on + strand, within H281DRAFT_00533at 598.224 kb on - strand, within H281DRAFT_00533at 598.224 kb on - strand, within H281DRAFT_00533at 598.224 kb on - strand, within H281DRAFT_00533at 598.224 kb on - strand, within H281DRAFT_00533at 598.224 kb on - strand, within H281DRAFT_00533at 598.224 kb on - strand, within H281DRAFT_00533at 598.235 kb on + strand, within H281DRAFT_00533at 598.238 kb on + strand, within H281DRAFT_00533at 598.238 kb on + strand, within H281DRAFT_00533at 598.238 kb on + strand, within H281DRAFT_00533at 598.239 kb on - strand, within H281DRAFT_00533at 598.239 kb on - strand, within H281DRAFT_00533at 598.405 kb on + strand, within H281DRAFT_00533at 598.405 kb on + strand, within H281DRAFT_00533at 598.405 kb on + strand, within H281DRAFT_00533at 598.406 kb on - strand, within H281DRAFT_00533at 598.434 kb on - strand, within H281DRAFT_00533

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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596,783 - H281DRAFT_00531 0.47 -0.9
596,866 + H281DRAFT_00531 0.58 +0.1
596,951 - H281DRAFT_00531 0.69 +0.6
597,190 + -0.0
597,206 + -0.2
597,206 + +0.6
597,206 + -0.2
597,238 + -0.1
597,238 + +0.5
597,238 + +0.2
597,239 - +0.2
597,241 + -0.4
597,241 + +0.3
597,250 - +0.5
597,270 + -1.1
597,276 + -1.8
597,572 + -0.2
597,572 + +0.0
597,573 - +0.2
598,064 + H281DRAFT_00533 0.18 -0.8
598,064 + H281DRAFT_00533 0.18 +0.5
598,065 - H281DRAFT_00533 0.18 -0.2
598,071 - H281DRAFT_00533 0.19 +0.7
598,156 + H281DRAFT_00533 0.22 -0.1
598,224 - H281DRAFT_00533 0.25 +0.5
598,224 - H281DRAFT_00533 0.25 -0.0
598,224 - H281DRAFT_00533 0.25 +0.1
598,224 - H281DRAFT_00533 0.25 +0.5
598,224 - H281DRAFT_00533 0.25 -0.4
598,224 - H281DRAFT_00533 0.25 -0.1
598,235 + H281DRAFT_00533 0.26 +0.4
598,238 + H281DRAFT_00533 0.26 +0.4
598,238 + H281DRAFT_00533 0.26 -1.0
598,238 + H281DRAFT_00533 0.26 -0.1
598,239 - H281DRAFT_00533 0.26 +1.0
598,239 - H281DRAFT_00533 0.26 +1.1
598,405 + H281DRAFT_00533 0.33 -0.4
598,405 + H281DRAFT_00533 0.33 +0.4
598,405 + H281DRAFT_00533 0.33 +0.3
598,406 - H281DRAFT_00533 0.34 +0.2
598,434 - H281DRAFT_00533 0.35 -0.2

Or see this region's nucleotide sequence