Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00520

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00519 and H281DRAFT_00520 are separated by 706 nucleotidesH281DRAFT_00520 and H281DRAFT_00521 are separated by 143 nucleotidesH281DRAFT_00521 and H281DRAFT_00522 are separated by 31 nucleotides H281DRAFT_00519: H281DRAFT_00519 - Beta-barrel assembly machine subunit BamB, at 580,362 to 581,507 _00519 H281DRAFT_00520: H281DRAFT_00520 - GTP-binding protein, at 582,214 to 583,551 _00520 H281DRAFT_00521: H281DRAFT_00521 - RNA-binding protein Hfq, at 583,695 to 583,931 _00521 H281DRAFT_00522: H281DRAFT_00522 - GTP-binding protein HflX, at 583,963 to 585,177 _00522 Position (kb) 582 583 584Strain fitness (log2 ratio) -2 -1 0 1at 581.901 kb on + strandat 582.054 kb on + strandat 582.054 kb on + strandat 583.617 kb on + strandat 583.639 kb on + strandat 583.663 kb on + strandat 583.929 kb on + strandat 584.109 kb on - strand, within H281DRAFT_00522at 584.375 kb on - strand, within H281DRAFT_00522at 584.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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581,901 + -0.3
582,054 + -0.3
582,054 + -1.1
583,617 + +1.1
583,639 + -0.1
583,663 + -2.2
583,929 + +0.3
584,109 - H281DRAFT_00522 0.12 -0.7
584,375 - H281DRAFT_00522 0.34 -0.0
584,375 - -1.5

Or see this region's nucleotide sequence