Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00519

Experiment: Phenylacetic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00517 and H281DRAFT_00518 are separated by 78 nucleotidesH281DRAFT_00518 and H281DRAFT_00519 are separated by 76 nucleotidesH281DRAFT_00519 and H281DRAFT_00520 are separated by 706 nucleotides H281DRAFT_00517: H281DRAFT_00517 - histidyl-tRNA synthetase, at 578,237 to 579,577 _00517 H281DRAFT_00518: H281DRAFT_00518 - Putative negative regulator of RcsB-dependent stress response, at 579,656 to 580,285 _00518 H281DRAFT_00519: H281DRAFT_00519 - Beta-barrel assembly machine subunit BamB, at 580,362 to 581,507 _00519 H281DRAFT_00520: H281DRAFT_00520 - GTP-binding protein, at 582,214 to 583,551 _00520 Position (kb) 580 581 582Strain fitness (log2 ratio) -1 0 1 2at 579.821 kb on + strand, within H281DRAFT_00518at 579.821 kb on + strand, within H281DRAFT_00518at 579.821 kb on + strand, within H281DRAFT_00518at 580.079 kb on + strand, within H281DRAFT_00518at 580.337 kb on + strandat 581.901 kb on + strandat 582.054 kb on + strandat 582.054 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
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579,821 + H281DRAFT_00518 0.26 +1.5
579,821 + H281DRAFT_00518 0.26 +0.8
579,821 + H281DRAFT_00518 0.26 +2.4
580,079 + H281DRAFT_00518 0.67 +0.2
580,337 + -0.8
581,901 + -0.3
582,054 + -0.3
582,054 + -1.1

Or see this region's nucleotide sequence