Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00048

Experiment: Phenylacetic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00047 and H281DRAFT_00048 are separated by 611 nucleotidesH281DRAFT_00048 and H281DRAFT_00049 are separated by 141 nucleotidesH281DRAFT_00049 and H281DRAFT_00050 overlap by 4 nucleotides H281DRAFT_00047: H281DRAFT_00047 - protease I, at 49,746 to 50,327 _00047 H281DRAFT_00048: H281DRAFT_00048 - hypothetical protein, at 50,939 to 51,046 _00048 H281DRAFT_00049: H281DRAFT_00049 - Putative intracellular protease/amidase, at 51,188 to 51,778 _00049 H281DRAFT_00050: H281DRAFT_00050 - Uncharacterized conserved protein, DUF1330 family, at 51,775 to 52,086 _00050 Position (kb) 50 51 52Strain fitness (log2 ratio) -1 0 1at 50.026 kb on - strand, within H281DRAFT_00047at 50.116 kb on + strand, within H281DRAFT_00047at 50.326 kb on - strandat 50.673 kb on - strandat 50.721 kb on + strandat 50.737 kb on + strandat 50.851 kb on - strandat 50.968 kb on + strand, within H281DRAFT_00048at 50.969 kb on - strand, within H281DRAFT_00048at 51.028 kb on + strand, within H281DRAFT_00048at 51.379 kb on + strand, within H281DRAFT_00049at 51.543 kb on + strand, within H281DRAFT_00049at 51.678 kb on + strandat 51.679 kb on - strand, within H281DRAFT_00049at 51.681 kb on - strand, within H281DRAFT_00049at 51.681 kb on - strand, within H281DRAFT_00049at 51.681 kb on - strand, within H281DRAFT_00049at 51.681 kb on - strand, within H281DRAFT_00049at 51.684 kb on + strand, within H281DRAFT_00049at 51.685 kb on - strand, within H281DRAFT_00049at 52.031 kb on + strand, within H281DRAFT_00050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phenylacetic (C)
remove
50,026 - H281DRAFT_00047 0.48 +0.7
50,116 + H281DRAFT_00047 0.64 +0.7
50,326 - -0.3
50,673 - +0.6
50,721 + +0.9
50,737 + +0.3
50,851 - -0.1
50,968 + H281DRAFT_00048 0.27 +1.0
50,969 - H281DRAFT_00048 0.28 +0.5
51,028 + H281DRAFT_00048 0.82 +0.7
51,379 + H281DRAFT_00049 0.32 +0.7
51,543 + H281DRAFT_00049 0.60 +1.1
51,678 + -0.3
51,679 - H281DRAFT_00049 0.83 +0.2
51,681 - H281DRAFT_00049 0.83 +0.4
51,681 - H281DRAFT_00049 0.83 -0.8
51,681 - H281DRAFT_00049 0.83 +1.1
51,681 - H281DRAFT_00049 0.83 +0.2
51,684 + H281DRAFT_00049 0.84 +0.2
51,685 - H281DRAFT_00049 0.84 +0.2
52,031 + H281DRAFT_00050 0.82 +0.5

Or see this region's nucleotide sequence