Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_521 and HP15_522 are separated by 6 nucleotides HP15_522 and HP15_523 are separated by 95 nucleotides HP15_523 and HP15_524 are separated by 56 nucleotides
HP15_521: HP15_521 - fimbrial protein pilin, at 535,532 to 535,894
_521
HP15_522: HP15_522 - type IV pilus biogenesis protein-like protein, at 535,901 to 536,458
_522
HP15_523: HP15_523 - two component, sigma54 specific, transcriptional regulator, Fis family, at 536,554 to 537,942
_523
HP15_524: HP15_524 - signal transduction histidine kinase, nitrogen specific, NtrB, at 537,999 to 539,654
_524
Position (kb) 536
537
538 Strain fitness (log2 ratio) -1
0
1
2 at 535.641 kb on - strand, within HP15_521 at 535.857 kb on - strand, within HP15_521 at 535.974 kb on - strand, within HP15_522 at 536.209 kb on - strand, within HP15_522 at 536.317 kb on - strand, within HP15_522 at 536.541 kb on + strand at 536.834 kb on - strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.851 kb on - strand, within HP15_523 at 536.919 kb on - strand, within HP15_523 at 536.919 kb on - strand, within HP15_523 at 537.031 kb on + strand, within HP15_523 at 537.116 kb on - strand, within HP15_523 at 537.143 kb on + strand, within HP15_523 at 537.149 kb on - strand, within HP15_523 at 537.238 kb on + strand, within HP15_523 at 537.480 kb on + strand, within HP15_523 at 537.501 kb on - strand, within HP15_523 at 537.534 kb on + strand, within HP15_523 at 537.542 kb on - strand, within HP15_523 at 537.574 kb on - strand, within HP15_523 at 537.574 kb on - strand, within HP15_523 at 537.624 kb on - strand, within HP15_523 at 537.703 kb on - strand, within HP15_523 at 537.703 kb on - strand, within HP15_523 at 537.719 kb on + strand, within HP15_523 at 537.719 kb on + strand, within HP15_523 at 537.745 kb on + strand, within HP15_523 at 537.748 kb on - strand, within HP15_523 at 537.753 kb on - strand, within HP15_523 at 537.758 kb on - strand, within HP15_523 at 537.850 kb on - strand at 537.914 kb on + strand at 537.919 kb on + strand at 537.927 kb on - strand at 538.008 kb on - strand at 538.097 kb on + strand at 538.213 kb on + strand, within HP15_524 at 538.218 kb on + strand, within HP15_524 at 538.270 kb on + strand, within HP15_524 at 538.285 kb on + strand, within HP15_524 at 538.285 kb on + strand, within HP15_524 at 538.293 kb on - strand, within HP15_524 at 538.323 kb on - strand, within HP15_524 at 538.461 kb on + strand, within HP15_524 at 538.504 kb on - strand, within HP15_524 at 538.607 kb on - strand, within HP15_524 at 538.607 kb on - strand, within HP15_524 at 538.690 kb on + strand, within HP15_524 at 538.766 kb on + strand, within HP15_524
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 535,641 - HP15_521 0.30 -0.2 535,857 - HP15_521 0.90 +0.0 535,974 - HP15_522 0.13 +0.3 536,209 - HP15_522 0.55 -1.1 536,317 - HP15_522 0.75 -0.6 536,541 + +0.6 536,834 - HP15_523 0.20 +0.6 536,841 + HP15_523 0.21 +1.4 536,841 + HP15_523 0.21 +0.4 536,841 + HP15_523 0.21 +1.7 536,849 - HP15_523 0.21 +1.6 536,849 - HP15_523 0.21 +0.4 536,849 - HP15_523 0.21 +1.1 536,851 - HP15_523 0.21 +0.8 536,919 - HP15_523 0.26 +1.5 536,919 - HP15_523 0.26 +0.9 537,031 + HP15_523 0.34 +1.6 537,116 - HP15_523 0.40 +0.8 537,143 + HP15_523 0.42 +0.6 537,149 - HP15_523 0.43 +1.3 537,238 + HP15_523 0.49 +0.9 537,480 + HP15_523 0.67 +0.5 537,501 - HP15_523 0.68 +1.8 537,534 + HP15_523 0.71 +1.2 537,542 - HP15_523 0.71 +0.5 537,574 - HP15_523 0.73 +0.8 537,574 - HP15_523 0.73 +0.5 537,624 - HP15_523 0.77 +0.3 537,703 - HP15_523 0.83 +1.3 537,703 - HP15_523 0.83 +1.2 537,719 + HP15_523 0.84 +1.1 537,719 + HP15_523 0.84 +0.8 537,745 + HP15_523 0.86 +0.9 537,748 - HP15_523 0.86 -0.9 537,753 - HP15_523 0.86 +0.6 537,758 - HP15_523 0.87 +1.6 537,850 - +1.0 537,914 + +1.0 537,919 + +0.6 537,927 - +1.1 538,008 - -1.2 538,097 + +1.7 538,213 + HP15_524 0.13 +0.8 538,218 + HP15_524 0.13 +0.7 538,270 + HP15_524 0.16 +0.8 538,285 + HP15_524 0.17 +0.8 538,285 + HP15_524 0.17 +0.0 538,293 - HP15_524 0.18 -0.1 538,323 - HP15_524 0.20 +2.7 538,461 + HP15_524 0.28 +0.1 538,504 - HP15_524 0.30 +0.9 538,607 - HP15_524 0.37 +1.1 538,607 - HP15_524 0.37 +2.0 538,690 + HP15_524 0.42 +0.3 538,766 + HP15_524 0.46 +1.2
Or see this region's nucleotide sequence