Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4032 and HP15_4033 are separated by 7 nucleotides HP15_4033 and HP15_4034 overlap by 1 nucleotides HP15_4034 and HP15_4035 are separated by 26 nucleotides HP15_4035 and HP15_4036 are separated by 13 nucleotides
HP15_4032: HP15_4032 - betaine aldehyde dehydrogenase, at 4,268,402 to 4,269,862
_4032
HP15_4033: HP15_4033 - 2-hydroxymuconic semialdehyde hydrolase, at 4,269,870 to 4,270,727
_4033
HP15_4034: HP15_4034 - hydratase/decarboxylase, at 4,270,727 to 4,271,512
_4034
HP15_4035: HP15_4035 - acetaldehyde dehydrogenase, at 4,271,539 to 4,272,474
_4035
HP15_4036: HP15_4036 - 4-hydroxy-2-ketovalerate aldolase, at 4,272,488 to 4,273,525
_4036
Position (kb)
4270
4271
4272 Strain fitness (log2 ratio)
-2
-1
0
1 at 4269.803 kb on + strand at 4269.879 kb on + strand at 4269.885 kb on - strand at 4269.885 kb on - strand at 4269.887 kb on - strand at 4269.887 kb on - strand at 4269.887 kb on - strand at 4269.887 kb on - strand at 4269.887 kb on - strand at 4269.928 kb on + strand at 4269.928 kb on + strand at 4269.951 kb on - strand at 4269.992 kb on - strand, within HP15_4033 at 4270.032 kb on - strand, within HP15_4033 at 4270.188 kb on + strand, within HP15_4033 at 4270.213 kb on - strand, within HP15_4033 at 4270.259 kb on - strand, within HP15_4033 at 4270.304 kb on + strand, within HP15_4033 at 4270.434 kb on - strand, within HP15_4033 at 4270.477 kb on - strand, within HP15_4033 at 4270.477 kb on - strand, within HP15_4033 at 4270.528 kb on + strand, within HP15_4033 at 4270.704 kb on - strand at 4270.769 kb on - strand at 4270.769 kb on - strand at 4270.853 kb on - strand, within HP15_4034 at 4270.985 kb on + strand, within HP15_4034 at 4270.985 kb on + strand, within HP15_4034 at 4270.993 kb on - strand, within HP15_4034 at 4270.993 kb on - strand, within HP15_4034 at 4270.995 kb on - strand, within HP15_4034 at 4271.090 kb on - strand, within HP15_4034 at 4271.095 kb on - strand, within HP15_4034 at 4271.261 kb on - strand, within HP15_4034 at 4271.322 kb on - strand, within HP15_4034 at 4271.370 kb on - strand, within HP15_4034 at 4271.443 kb on + strand at 4271.443 kb on + strand at 4271.443 kb on + strand at 4271.451 kb on - strand at 4271.479 kb on - strand at 4271.673 kb on + strand, within HP15_4035 at 4271.676 kb on - strand, within HP15_4035 at 4271.681 kb on - strand, within HP15_4035 at 4271.691 kb on - strand, within HP15_4035 at 4271.700 kb on - strand, within HP15_4035 at 4271.777 kb on + strand, within HP15_4035 at 4271.784 kb on + strand, within HP15_4035 at 4271.824 kb on - strand, within HP15_4035 at 4271.888 kb on + strand, within HP15_4035 at 4271.888 kb on + strand, within HP15_4035 at 4271.946 kb on - strand, within HP15_4035 at 4271.979 kb on + strand, within HP15_4035 at 4272.091 kb on - strand, within HP15_4035 at 4272.103 kb on + strand, within HP15_4035 at 4272.111 kb on - strand, within HP15_4035 at 4272.119 kb on - strand, within HP15_4035 at 4272.126 kb on - strand, within HP15_4035 at 4272.228 kb on + strand, within HP15_4035 at 4272.317 kb on + strand, within HP15_4035 at 4272.387 kb on - strand at 4272.387 kb on - strand at 4272.393 kb on + strand at 4272.422 kb on + strand at 4272.473 kb on - strand at 4272.491 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 4,269,803 + +0.6 4,269,879 + +0.2 4,269,885 - +0.2 4,269,885 - -0.8 4,269,887 - +0.1 4,269,887 - +0.3 4,269,887 - -0.3 4,269,887 - -0.1 4,269,887 - -2.0 4,269,928 + -0.1 4,269,928 + +0.0 4,269,951 - -0.2 4,269,992 - HP15_4033 0.14 -0.2 4,270,032 - HP15_4033 0.19 +1.4 4,270,188 + HP15_4033 0.37 +0.9 4,270,213 - HP15_4033 0.40 +0.4 4,270,259 - HP15_4033 0.45 -0.5 4,270,304 + HP15_4033 0.51 +0.7 4,270,434 - HP15_4033 0.66 +1.0 4,270,477 - HP15_4033 0.71 -0.8 4,270,477 - HP15_4033 0.71 +0.5 4,270,528 + HP15_4033 0.77 +0.9 4,270,704 - +0.2 4,270,769 - +0.5 4,270,769 - +0.1 4,270,853 - HP15_4034 0.16 -0.4 4,270,985 + HP15_4034 0.33 +0.5 4,270,985 + HP15_4034 0.33 -0.3 4,270,993 - HP15_4034 0.34 -1.8 4,270,993 - HP15_4034 0.34 -0.1 4,270,995 - HP15_4034 0.34 -0.2 4,271,090 - HP15_4034 0.46 +1.2 4,271,095 - HP15_4034 0.47 -0.7 4,271,261 - HP15_4034 0.68 -0.1 4,271,322 - HP15_4034 0.76 -0.1 4,271,370 - HP15_4034 0.82 +0.1 4,271,443 + -0.2 4,271,443 + +0.7 4,271,443 + -0.8 4,271,451 - +0.3 4,271,479 - +1.1 4,271,673 + HP15_4035 0.14 +0.6 4,271,676 - HP15_4035 0.15 +0.4 4,271,681 - HP15_4035 0.15 +0.2 4,271,691 - HP15_4035 0.16 +0.0 4,271,700 - HP15_4035 0.17 +1.2 4,271,777 + HP15_4035 0.25 +0.1 4,271,784 + HP15_4035 0.26 -0.5 4,271,824 - HP15_4035 0.30 +0.1 4,271,888 + HP15_4035 0.37 +0.7 4,271,888 + HP15_4035 0.37 +0.3 4,271,946 - HP15_4035 0.43 +0.6 4,271,979 + HP15_4035 0.47 -0.5 4,272,091 - HP15_4035 0.59 -0.1 4,272,103 + HP15_4035 0.60 -0.0 4,272,111 - HP15_4035 0.61 -0.8 4,272,119 - HP15_4035 0.62 -0.3 4,272,126 - HP15_4035 0.63 +0.4 4,272,228 + HP15_4035 0.74 -0.6 4,272,317 + HP15_4035 0.83 -0.8 4,272,387 - -0.1 4,272,387 - -0.0 4,272,393 + +0.6 4,272,422 + +0.5 4,272,473 - -0.5 4,272,491 + +1.0
Or see this region's nucleotide sequence