Strain Fitness in Marinobacter adhaerens HP15 around HP15_4034

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4032 and HP15_4033 are separated by 7 nucleotidesHP15_4033 and HP15_4034 overlap by 1 nucleotidesHP15_4034 and HP15_4035 are separated by 26 nucleotidesHP15_4035 and HP15_4036 are separated by 13 nucleotides HP15_4032: HP15_4032 - betaine aldehyde dehydrogenase, at 4,268,402 to 4,269,862 _4032 HP15_4033: HP15_4033 - 2-hydroxymuconic semialdehyde hydrolase, at 4,269,870 to 4,270,727 _4033 HP15_4034: HP15_4034 - hydratase/decarboxylase, at 4,270,727 to 4,271,512 _4034 HP15_4035: HP15_4035 - acetaldehyde dehydrogenase, at 4,271,539 to 4,272,474 _4035 HP15_4036: HP15_4036 - 4-hydroxy-2-ketovalerate aldolase, at 4,272,488 to 4,273,525 _4036 Position (kb) 4270 4271 4272Strain fitness (log2 ratio) -2 -1 0 1at 4269.803 kb on + strandat 4269.879 kb on + strandat 4269.885 kb on - strandat 4269.885 kb on - strandat 4269.887 kb on - strandat 4269.887 kb on - strandat 4269.887 kb on - strandat 4269.887 kb on - strandat 4269.887 kb on - strandat 4269.928 kb on + strandat 4269.928 kb on + strandat 4269.951 kb on - strandat 4269.992 kb on - strand, within HP15_4033at 4270.032 kb on - strand, within HP15_4033at 4270.188 kb on + strand, within HP15_4033at 4270.213 kb on - strand, within HP15_4033at 4270.259 kb on - strand, within HP15_4033at 4270.304 kb on + strand, within HP15_4033at 4270.434 kb on - strand, within HP15_4033at 4270.477 kb on - strand, within HP15_4033at 4270.477 kb on - strand, within HP15_4033at 4270.528 kb on + strand, within HP15_4033at 4270.704 kb on - strandat 4270.769 kb on - strandat 4270.769 kb on - strandat 4270.853 kb on - strand, within HP15_4034at 4270.985 kb on + strand, within HP15_4034at 4270.985 kb on + strand, within HP15_4034at 4270.993 kb on - strand, within HP15_4034at 4270.993 kb on - strand, within HP15_4034at 4270.995 kb on - strand, within HP15_4034at 4271.090 kb on - strand, within HP15_4034at 4271.095 kb on - strand, within HP15_4034at 4271.261 kb on - strand, within HP15_4034at 4271.322 kb on - strand, within HP15_4034at 4271.370 kb on - strand, within HP15_4034at 4271.443 kb on + strandat 4271.443 kb on + strandat 4271.443 kb on + strandat 4271.451 kb on - strandat 4271.479 kb on - strandat 4271.673 kb on + strand, within HP15_4035at 4271.676 kb on - strand, within HP15_4035at 4271.681 kb on - strand, within HP15_4035at 4271.691 kb on - strand, within HP15_4035at 4271.700 kb on - strand, within HP15_4035at 4271.777 kb on + strand, within HP15_4035at 4271.784 kb on + strand, within HP15_4035at 4271.824 kb on - strand, within HP15_4035at 4271.888 kb on + strand, within HP15_4035at 4271.888 kb on + strand, within HP15_4035at 4271.946 kb on - strand, within HP15_4035at 4271.979 kb on + strand, within HP15_4035at 4272.091 kb on - strand, within HP15_4035at 4272.103 kb on + strand, within HP15_4035at 4272.111 kb on - strand, within HP15_4035at 4272.119 kb on - strand, within HP15_4035at 4272.126 kb on - strand, within HP15_4035at 4272.228 kb on + strand, within HP15_4035at 4272.317 kb on + strand, within HP15_4035at 4272.387 kb on - strandat 4272.387 kb on - strandat 4272.393 kb on + strandat 4272.422 kb on + strandat 4272.473 kb on - strandat 4272.491 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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4,269,803 + +0.6
4,269,879 + +0.2
4,269,885 - +0.2
4,269,885 - -0.8
4,269,887 - +0.1
4,269,887 - +0.3
4,269,887 - -0.3
4,269,887 - -0.1
4,269,887 - -2.0
4,269,928 + -0.1
4,269,928 + +0.0
4,269,951 - -0.2
4,269,992 - HP15_4033 0.14 -0.2
4,270,032 - HP15_4033 0.19 +1.4
4,270,188 + HP15_4033 0.37 +0.9
4,270,213 - HP15_4033 0.40 +0.4
4,270,259 - HP15_4033 0.45 -0.5
4,270,304 + HP15_4033 0.51 +0.7
4,270,434 - HP15_4033 0.66 +1.0
4,270,477 - HP15_4033 0.71 -0.8
4,270,477 - HP15_4033 0.71 +0.5
4,270,528 + HP15_4033 0.77 +0.9
4,270,704 - +0.2
4,270,769 - +0.5
4,270,769 - +0.1
4,270,853 - HP15_4034 0.16 -0.4
4,270,985 + HP15_4034 0.33 +0.5
4,270,985 + HP15_4034 0.33 -0.3
4,270,993 - HP15_4034 0.34 -1.8
4,270,993 - HP15_4034 0.34 -0.1
4,270,995 - HP15_4034 0.34 -0.2
4,271,090 - HP15_4034 0.46 +1.2
4,271,095 - HP15_4034 0.47 -0.7
4,271,261 - HP15_4034 0.68 -0.1
4,271,322 - HP15_4034 0.76 -0.1
4,271,370 - HP15_4034 0.82 +0.1
4,271,443 + -0.2
4,271,443 + +0.7
4,271,443 + -0.8
4,271,451 - +0.3
4,271,479 - +1.1
4,271,673 + HP15_4035 0.14 +0.6
4,271,676 - HP15_4035 0.15 +0.4
4,271,681 - HP15_4035 0.15 +0.2
4,271,691 - HP15_4035 0.16 +0.0
4,271,700 - HP15_4035 0.17 +1.2
4,271,777 + HP15_4035 0.25 +0.1
4,271,784 + HP15_4035 0.26 -0.5
4,271,824 - HP15_4035 0.30 +0.1
4,271,888 + HP15_4035 0.37 +0.7
4,271,888 + HP15_4035 0.37 +0.3
4,271,946 - HP15_4035 0.43 +0.6
4,271,979 + HP15_4035 0.47 -0.5
4,272,091 - HP15_4035 0.59 -0.1
4,272,103 + HP15_4035 0.60 -0.0
4,272,111 - HP15_4035 0.61 -0.8
4,272,119 - HP15_4035 0.62 -0.3
4,272,126 - HP15_4035 0.63 +0.4
4,272,228 + HP15_4035 0.74 -0.6
4,272,317 + HP15_4035 0.83 -0.8
4,272,387 - -0.1
4,272,387 - -0.0
4,272,393 + +0.6
4,272,422 + +0.5
4,272,473 - -0.5
4,272,491 + +1.0

Or see this region's nucleotide sequence