Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3819 and HP15_3820 are separated by 232 nucleotides HP15_3820 and HP15_3821 are separated by 162 nucleotides HP15_3821 and HP15_3822 are separated by 3 nucleotides
HP15_3819: HP15_3819 - transcriptional regulator, DeoR, predicted, at 4,044,951 to 4,045,892
_3819
HP15_3820: HP15_3820 - major facilitator superfamily MFS_1, at 4,046,125 to 4,047,408
_3820
HP15_3821: HP15_3821 - transcriptional regulator, MarR family, at 4,047,571 to 4,047,996
_3821
HP15_3822: HP15_3822 - drug resistance transporter, EmrB/QacA family, at 4,048,000 to 4,049,391
_3822
Position (kb)
4046
4047
4048 Strain fitness (log2 ratio)
-1
0
1 at 4045.131 kb on + strand, within HP15_3819 at 4045.382 kb on - strand, within HP15_3819 at 4045.606 kb on + strand, within HP15_3819 at 4045.774 kb on + strand, within HP15_3819 at 4045.917 kb on - strand at 4046.009 kb on + strand at 4046.029 kb on + strand at 4046.037 kb on - strand at 4046.056 kb on + strand at 4046.056 kb on + strand at 4046.117 kb on - strand at 4046.117 kb on - strand at 4046.141 kb on + strand at 4046.178 kb on + strand at 4046.186 kb on - strand at 4046.213 kb on + strand at 4046.268 kb on + strand, within HP15_3820 at 4046.299 kb on - strand, within HP15_3820 at 4046.306 kb on - strand, within HP15_3820 at 4046.350 kb on + strand, within HP15_3820 at 4046.382 kb on + strand, within HP15_3820 at 4046.670 kb on + strand, within HP15_3820 at 4046.688 kb on - strand, within HP15_3820 at 4046.748 kb on + strand, within HP15_3820 at 4046.803 kb on - strand, within HP15_3820 at 4046.803 kb on - strand, within HP15_3820 at 4046.816 kb on + strand, within HP15_3820 at 4046.922 kb on + strand, within HP15_3820 at 4046.960 kb on + strand, within HP15_3820 at 4046.960 kb on + strand, within HP15_3820 at 4046.991 kb on + strand, within HP15_3820 at 4046.999 kb on - strand, within HP15_3820 at 4047.001 kb on + strand, within HP15_3820 at 4047.015 kb on + strand, within HP15_3820 at 4047.024 kb on + strand, within HP15_3820 at 4047.119 kb on - strand, within HP15_3820 at 4047.119 kb on - strand, within HP15_3820 at 4047.165 kb on + strand, within HP15_3820 at 4047.259 kb on - strand, within HP15_3820 at 4047.285 kb on - strand at 4047.383 kb on + strand at 4047.715 kb on - strand, within HP15_3821 at 4047.715 kb on - strand, within HP15_3821 at 4047.774 kb on - strand, within HP15_3821 at 4047.776 kb on + strand, within HP15_3821 at 4047.776 kb on + strand, within HP15_3821 at 4047.784 kb on - strand, within HP15_3821 at 4047.896 kb on - strand, within HP15_3821 at 4047.934 kb on - strand, within HP15_3821 at 4047.975 kb on - strand at 4048.055 kb on + strand at 4048.073 kb on - strand at 4048.093 kb on + strand at 4048.106 kb on + strand at 4048.216 kb on - strand, within HP15_3822 at 4048.241 kb on + strand, within HP15_3822 at 4048.242 kb on + strand, within HP15_3822 at 4048.280 kb on + strand, within HP15_3822 at 4048.337 kb on - strand, within HP15_3822 at 4048.377 kb on + strand, within HP15_3822 at 4048.385 kb on - strand, within HP15_3822
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 4,045,131 + HP15_3819 0.19 +0.0 4,045,382 - HP15_3819 0.46 +0.2 4,045,606 + HP15_3819 0.70 -0.6 4,045,774 + HP15_3819 0.87 -0.0 4,045,917 - +0.5 4,046,009 + -0.6 4,046,029 + +0.6 4,046,037 - +0.1 4,046,056 + +0.3 4,046,056 + -0.9 4,046,117 - +0.4 4,046,117 - -0.2 4,046,141 + -0.8 4,046,178 + -0.4 4,046,186 - +1.2 4,046,213 + -0.3 4,046,268 + HP15_3820 0.11 +1.0 4,046,299 - HP15_3820 0.14 -0.2 4,046,306 - HP15_3820 0.14 +1.2 4,046,350 + HP15_3820 0.18 +0.1 4,046,382 + HP15_3820 0.20 +1.6 4,046,670 + HP15_3820 0.42 -0.1 4,046,688 - HP15_3820 0.44 +0.4 4,046,748 + HP15_3820 0.49 +0.7 4,046,803 - HP15_3820 0.53 -0.4 4,046,803 - HP15_3820 0.53 -1.4 4,046,816 + HP15_3820 0.54 +1.0 4,046,922 + HP15_3820 0.62 +0.6 4,046,960 + HP15_3820 0.65 -0.0 4,046,960 + HP15_3820 0.65 +0.1 4,046,991 + HP15_3820 0.67 +0.4 4,046,999 - HP15_3820 0.68 -0.0 4,047,001 + HP15_3820 0.68 +1.3 4,047,015 + HP15_3820 0.69 +1.1 4,047,024 + HP15_3820 0.70 +1.6 4,047,119 - HP15_3820 0.77 +0.1 4,047,119 - HP15_3820 0.77 +0.4 4,047,165 + HP15_3820 0.81 +1.2 4,047,259 - HP15_3820 0.88 +1.2 4,047,285 - -0.3 4,047,383 + +0.1 4,047,715 - HP15_3821 0.34 -1.6 4,047,715 - HP15_3821 0.34 +0.2 4,047,774 - HP15_3821 0.48 -0.6 4,047,776 + HP15_3821 0.48 -0.6 4,047,776 + HP15_3821 0.48 +1.0 4,047,784 - HP15_3821 0.50 -0.1 4,047,896 - HP15_3821 0.76 +0.6 4,047,934 - HP15_3821 0.85 +1.5 4,047,975 - -0.3 4,048,055 + +0.5 4,048,073 - -0.5 4,048,093 + +0.1 4,048,106 + +0.6 4,048,216 - HP15_3822 0.16 +0.4 4,048,241 + HP15_3822 0.17 -0.3 4,048,242 + HP15_3822 0.17 +0.2 4,048,280 + HP15_3822 0.20 +0.3 4,048,337 - HP15_3822 0.24 -0.1 4,048,377 + HP15_3822 0.27 -0.1 4,048,385 - HP15_3822 0.28 -0.1
Or see this region's nucleotide sequence