Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3441 and HP15_3442 are separated by 82 nucleotides HP15_3442 and HP15_3443 are separated by 23 nucleotides HP15_3443 and HP15_3444 are separated by 95 nucleotides HP15_3444 and HP15_3445 are separated by 48 nucleotides HP15_3445 and HP15_3446 overlap by 4 nucleotides
HP15_3441: HP15_3441 - OmpA/MotB domain protein, at 3,621,033 to 3,621,473
_3441
HP15_3442: HP15_3442 - conserved hypothetical protein, membrane, at 3,621,556 to 3,621,936
_3442
HP15_3443: HP15_3443 - transglycosylase-associated-like protein, at 3,621,960 to 3,622,202
_3443
HP15_3444: HP15_3444 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,622,298 to 3,622,996
_3444
HP15_3445: HP15_3445 - sortase family protein, at 3,623,045 to 3,623,635
_3445
HP15_3446: HP15_3446 - protein containing a von Willebrand factor type A (vWA) domain, at 3,623,632 to 3,625,746
_3446
Position (kb) 3622
3623 Strain fitness (log2 ratio) -2
-1
0
1 at 3621.389 kb on + strand, within HP15_3441 at 3621.395 kb on + strand, within HP15_3441 at 3621.510 kb on + strand at 3621.627 kb on - strand, within HP15_3442 at 3621.682 kb on + strand, within HP15_3442 at 3621.746 kb on + strand, within HP15_3442 at 3621.754 kb on - strand, within HP15_3442 at 3621.766 kb on - strand, within HP15_3442 at 3621.799 kb on - strand, within HP15_3442 at 3621.819 kb on - strand, within HP15_3442 at 3621.819 kb on - strand, within HP15_3442 at 3622.222 kb on - strand at 3622.280 kb on + strand at 3622.280 kb on - strand at 3622.280 kb on - strand at 3622.280 kb on - strand at 3622.366 kb on - strand at 3622.388 kb on - strand, within HP15_3444 at 3622.423 kb on + strand, within HP15_3444 at 3622.574 kb on - strand, within HP15_3444 at 3622.575 kb on - strand, within HP15_3444 at 3622.631 kb on + strand, within HP15_3444 at 3622.679 kb on - strand, within HP15_3444 at 3622.689 kb on - strand, within HP15_3444 at 3622.703 kb on - strand, within HP15_3444 at 3622.826 kb on + strand, within HP15_3444 at 3622.836 kb on - strand, within HP15_3444 at 3623.108 kb on + strand, within HP15_3445 at 3623.145 kb on + strand, within HP15_3445 at 3623.146 kb on + strand, within HP15_3445 at 3623.164 kb on + strand, within HP15_3445 at 3623.190 kb on + strand, within HP15_3445 at 3623.195 kb on + strand, within HP15_3445 at 3623.198 kb on - strand, within HP15_3445 at 3623.229 kb on + strand, within HP15_3445 at 3623.246 kb on - strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.267 kb on - strand, within HP15_3445 at 3623.267 kb on - strand, within HP15_3445 at 3623.299 kb on + strand, within HP15_3445 at 3623.309 kb on + strand, within HP15_3445 at 3623.417 kb on - strand, within HP15_3445 at 3623.430 kb on + strand, within HP15_3445 at 3623.588 kb on + strand at 3623.593 kb on + strand at 3623.727 kb on + strand at 3623.802 kb on + strand at 3623.802 kb on + strand at 3623.810 kb on - strand at 3623.853 kb on - strand, within HP15_3446 at 3623.874 kb on - strand, within HP15_3446 at 3623.897 kb on - strand, within HP15_3446
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 3,621,389 + HP15_3441 0.81 -0.3 3,621,395 + HP15_3441 0.82 +0.3 3,621,510 + -0.4 3,621,627 - HP15_3442 0.19 -0.4 3,621,682 + HP15_3442 0.33 +0.4 3,621,746 + HP15_3442 0.50 -0.4 3,621,754 - HP15_3442 0.52 -0.1 3,621,766 - HP15_3442 0.55 +0.1 3,621,799 - HP15_3442 0.64 +0.8 3,621,819 - HP15_3442 0.69 +0.4 3,621,819 - HP15_3442 0.69 +0.2 3,622,222 - -0.3 3,622,280 + -0.0 3,622,280 - +0.6 3,622,280 - +1.6 3,622,280 - +0.9 3,622,366 - -0.1 3,622,388 - HP15_3444 0.13 +0.5 3,622,423 + HP15_3444 0.18 +0.7 3,622,574 - HP15_3444 0.39 +1.2 3,622,575 - HP15_3444 0.40 +0.6 3,622,631 + HP15_3444 0.48 +0.4 3,622,679 - HP15_3444 0.55 +1.7 3,622,689 - HP15_3444 0.56 +0.8 3,622,703 - HP15_3444 0.58 +0.1 3,622,826 + HP15_3444 0.76 -0.1 3,622,836 - HP15_3444 0.77 +1.0 3,623,108 + HP15_3445 0.11 -1.2 3,623,145 + HP15_3445 0.17 +0.1 3,623,146 + HP15_3445 0.17 -0.8 3,623,164 + HP15_3445 0.20 +1.2 3,623,190 + HP15_3445 0.25 +0.6 3,623,195 + HP15_3445 0.25 +0.5 3,623,198 - HP15_3445 0.26 -0.2 3,623,229 + HP15_3445 0.31 -0.1 3,623,246 - HP15_3445 0.34 +0.6 3,623,259 + HP15_3445 0.36 -0.9 3,623,259 + HP15_3445 0.36 +0.2 3,623,259 + HP15_3445 0.36 -0.7 3,623,259 + HP15_3445 0.36 +0.3 3,623,267 - HP15_3445 0.38 -0.1 3,623,267 - HP15_3445 0.38 +1.6 3,623,299 + HP15_3445 0.43 -2.4 3,623,309 + HP15_3445 0.45 +0.6 3,623,417 - HP15_3445 0.63 +0.7 3,623,430 + HP15_3445 0.65 +0.2 3,623,588 + +0.0 3,623,593 + -0.1 3,623,727 + +1.0 3,623,802 + +0.5 3,623,802 + +0.3 3,623,810 - +0.2 3,623,853 - HP15_3446 0.10 +1.2 3,623,874 - HP15_3446 0.11 +0.7 3,623,897 - HP15_3446 0.13 -0.3
Or see this region's nucleotide sequence