Strain Fitness in Marinobacter adhaerens HP15 around HP15_3204

Experiment: Ethanol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3203 and HP15_3204 are separated by 26 nucleotidesHP15_3204 and HP15_3205 are separated by 136 nucleotidesHP15_3205 and HP15_3206 are separated by 6 nucleotides HP15_3203: HP15_3203 - proline aminopeptidase P II, at 3,355,964 to 3,357,283 _3203 HP15_3204: HP15_3204 - yecA family protein, at 3,357,310 to 3,357,909 _3204 HP15_3205: HP15_3205 - conserved hypothetical protein, secreted, at 3,358,046 to 3,358,609 _3205 HP15_3206: HP15_3206 - conserved hypothetical protein, membrane, at 3,358,616 to 3,359,248 _3206 Position (kb) 3357 3358Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3356.430 kb on + strand, within HP15_3203at 3356.517 kb on - strand, within HP15_3203at 3356.533 kb on - strand, within HP15_3203at 3356.540 kb on + strand, within HP15_3203at 3356.600 kb on - strand, within HP15_3203at 3356.606 kb on - strand, within HP15_3203at 3356.606 kb on - strand, within HP15_3203at 3356.606 kb on - strand, within HP15_3203at 3356.620 kb on + strand, within HP15_3203at 3356.628 kb on - strand, within HP15_3203at 3356.651 kb on - strand, within HP15_3203at 3356.651 kb on - strand, within HP15_3203at 3356.716 kb on + strand, within HP15_3203at 3356.860 kb on - strand, within HP15_3203at 3356.905 kb on - strand, within HP15_3203at 3357.045 kb on + strand, within HP15_3203at 3357.107 kb on - strand, within HP15_3203at 3357.220 kb on - strandat 3357.308 kb on + strandat 3357.352 kb on + strandat 3357.565 kb on + strand, within HP15_3204at 3357.593 kb on - strand, within HP15_3204at 3357.648 kb on - strand, within HP15_3204at 3357.832 kb on + strand, within HP15_3204at 3357.943 kb on - strandat 3357.964 kb on + strandat 3357.972 kb on - strandat 3358.145 kb on + strand, within HP15_3205at 3358.200 kb on - strand, within HP15_3205at 3358.264 kb on + strand, within HP15_3205at 3358.292 kb on - strand, within HP15_3205at 3358.292 kb on - strand, within HP15_3205at 3358.383 kb on + strand, within HP15_3205at 3358.445 kb on + strand, within HP15_3205at 3358.453 kb on - strand, within HP15_3205at 3358.460 kb on + strand, within HP15_3205at 3358.463 kb on - strand, within HP15_3205at 3358.478 kb on - strand, within HP15_3205at 3358.587 kb on + strandat 3358.630 kb on + strandat 3358.630 kb on + strandat 3358.638 kb on - strandat 3358.638 kb on - strandat 3358.717 kb on - strand, within HP15_3206at 3358.795 kb on + strand, within HP15_3206

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
remove
3,356,430 + HP15_3203 0.35 -1.2
3,356,517 - HP15_3203 0.42 -1.4
3,356,533 - HP15_3203 0.43 -3.0
3,356,540 + HP15_3203 0.44 -3.5
3,356,600 - HP15_3203 0.48 -1.4
3,356,606 - HP15_3203 0.49 -3.8
3,356,606 - HP15_3203 0.49 -1.2
3,356,606 - HP15_3203 0.49 -1.2
3,356,620 + HP15_3203 0.50 -4.1
3,356,628 - HP15_3203 0.50 -2.5
3,356,651 - HP15_3203 0.52 -3.6
3,356,651 - HP15_3203 0.52 -0.2
3,356,716 + HP15_3203 0.57 -3.0
3,356,860 - HP15_3203 0.68 -3.0
3,356,905 - HP15_3203 0.71 -2.2
3,357,045 + HP15_3203 0.82 -1.2
3,357,107 - HP15_3203 0.87 -2.1
3,357,220 - -2.5
3,357,308 + -0.2
3,357,352 + -2.2
3,357,565 + HP15_3204 0.42 -0.0
3,357,593 - HP15_3204 0.47 -2.7
3,357,648 - HP15_3204 0.56 -1.0
3,357,832 + HP15_3204 0.87 -0.4
3,357,943 - +0.1
3,357,964 + -1.7
3,357,972 - -0.4
3,358,145 + HP15_3205 0.18 +0.7
3,358,200 - HP15_3205 0.27 -0.1
3,358,264 + HP15_3205 0.39 +0.6
3,358,292 - HP15_3205 0.44 +0.0
3,358,292 - HP15_3205 0.44 +0.5
3,358,383 + HP15_3205 0.60 +0.0
3,358,445 + HP15_3205 0.71 +0.5
3,358,453 - HP15_3205 0.72 +0.8
3,358,460 + HP15_3205 0.73 +0.6
3,358,463 - HP15_3205 0.74 -0.2
3,358,478 - HP15_3205 0.77 -0.2
3,358,587 + +0.7
3,358,630 + +0.1
3,358,630 + -0.4
3,358,638 - +0.3
3,358,638 - +0.1
3,358,717 - HP15_3206 0.16 -0.3
3,358,795 + HP15_3206 0.28 -0.7

Or see this region's nucleotide sequence