Strain Fitness in Marinobacter adhaerens HP15 around HP15_2877

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2875 and HP15_2876 are separated by 41 nucleotidesHP15_2876 and HP15_2877 overlap by 4 nucleotidesHP15_2877 and HP15_2878 overlap by 1 nucleotidesHP15_2878 and HP15_2879 overlap by 4 nucleotides HP15_2875: HP15_2875 - urease gamma subunit, at 3,011,824 to 3,012,126 _2875 HP15_2876: HP15_2876 - urease accessory protein UreD, at 3,012,168 to 3,013,064 _2876 HP15_2877: HP15_2877 - ABC transporter, urea, ATP-binding protein, UrtE, at 3,013,061 to 3,013,759 _2877 HP15_2878: HP15_2878 - urea ABC transporter, ATP-binding protein UrtD, at 3,013,759 to 3,014,583 _2878 HP15_2879: HP15_2879 - urea ABC transporter, permease protein UrtC, at 3,014,580 to 3,015,704 _2879 Position (kb) 3013 3014Strain fitness (log2 ratio) -2 -1 0 1at 3012.068 kb on + strand, within HP15_2875at 3012.207 kb on + strandat 3012.212 kb on + strandat 3012.212 kb on + strandat 3012.212 kb on + strandat 3012.212 kb on + strandat 3012.217 kb on + strandat 3012.222 kb on + strandat 3012.230 kb on - strandat 3012.285 kb on + strand, within HP15_2876at 3012.388 kb on + strand, within HP15_2876at 3012.401 kb on + strand, within HP15_2876at 3012.417 kb on + strand, within HP15_2876at 3012.433 kb on + strand, within HP15_2876at 3012.618 kb on + strand, within HP15_2876at 3012.636 kb on - strand, within HP15_2876at 3012.694 kb on - strand, within HP15_2876at 3012.722 kb on + strand, within HP15_2876at 3012.736 kb on + strand, within HP15_2876at 3012.744 kb on - strand, within HP15_2876at 3012.773 kb on + strand, within HP15_2876at 3012.785 kb on - strand, within HP15_2876at 3012.812 kb on + strand, within HP15_2876at 3012.896 kb on - strand, within HP15_2876at 3012.896 kb on - strand, within HP15_2876at 3012.896 kb on - strand, within HP15_2876at 3012.938 kb on - strand, within HP15_2876at 3012.983 kb on - strandat 3012.983 kb on - strandat 3012.994 kb on + strandat 3013.002 kb on - strandat 3013.002 kb on - strandat 3013.073 kb on - strandat 3013.468 kb on + strand, within HP15_2877at 3013.491 kb on + strand, within HP15_2877at 3013.531 kb on + strand, within HP15_2877at 3013.539 kb on - strand, within HP15_2877at 3013.549 kb on - strand, within HP15_2877at 3013.633 kb on + strand, within HP15_2877at 3013.635 kb on - strand, within HP15_2877at 3013.652 kb on + strand, within HP15_2877at 3013.690 kb on + strandat 3013.756 kb on + strandat 3013.848 kb on - strand, within HP15_2878at 3014.230 kb on - strand, within HP15_2878at 3014.265 kb on + strand, within HP15_2878at 3014.447 kb on + strand, within HP15_2878at 3014.498 kb on - strand, within HP15_2878at 3014.498 kb on - strand, within HP15_2878at 3014.498 kb on - strand, within HP15_2878at 3014.555 kb on + strandat 3014.659 kb on + strandat 3014.667 kb on - strandat 3014.751 kb on - strand, within HP15_2879

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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3,012,068 + HP15_2875 0.81 +0.6
3,012,207 + -0.3
3,012,212 + +0.5
3,012,212 + +0.6
3,012,212 + -0.9
3,012,212 + -0.0
3,012,217 + +0.6
3,012,222 + +0.1
3,012,230 - +0.2
3,012,285 + HP15_2876 0.13 +0.3
3,012,388 + HP15_2876 0.25 +0.7
3,012,401 + HP15_2876 0.26 +0.3
3,012,417 + HP15_2876 0.28 -0.3
3,012,433 + HP15_2876 0.30 -1.9
3,012,618 + HP15_2876 0.50 +0.7
3,012,636 - HP15_2876 0.52 -0.5
3,012,694 - HP15_2876 0.59 -0.9
3,012,722 + HP15_2876 0.62 -0.5
3,012,736 + HP15_2876 0.63 +0.3
3,012,744 - HP15_2876 0.64 -1.0
3,012,773 + HP15_2876 0.67 -0.1
3,012,785 - HP15_2876 0.69 +0.7
3,012,812 + HP15_2876 0.72 +0.7
3,012,896 - HP15_2876 0.81 +0.8
3,012,896 - HP15_2876 0.81 +0.2
3,012,896 - HP15_2876 0.81 +0.9
3,012,938 - HP15_2876 0.86 -0.8
3,012,983 - -0.9
3,012,983 - -0.5
3,012,994 + +0.6
3,013,002 - -0.2
3,013,002 - -1.1
3,013,073 - -1.3
3,013,468 + HP15_2877 0.58 +1.5
3,013,491 + HP15_2877 0.62 +0.1
3,013,531 + HP15_2877 0.67 +0.9
3,013,539 - HP15_2877 0.68 -0.0
3,013,549 - HP15_2877 0.70 +0.3
3,013,633 + HP15_2877 0.82 +0.4
3,013,635 - HP15_2877 0.82 +0.9
3,013,652 + HP15_2877 0.85 +1.2
3,013,690 + +0.2
3,013,756 + -0.3
3,013,848 - HP15_2878 0.11 +0.4
3,014,230 - HP15_2878 0.57 -1.7
3,014,265 + HP15_2878 0.61 +0.9
3,014,447 + HP15_2878 0.83 -1.0
3,014,498 - HP15_2878 0.90 -0.6
3,014,498 - HP15_2878 0.90 -0.5
3,014,498 - HP15_2878 0.90 -0.5
3,014,555 + -1.0
3,014,659 + -0.2
3,014,667 - -0.6
3,014,751 - HP15_2879 0.15 +0.1

Or see this region's nucleotide sequence