Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2875 and HP15_2876 are separated by 41 nucleotides HP15_2876 and HP15_2877 overlap by 4 nucleotides HP15_2877 and HP15_2878 overlap by 1 nucleotides HP15_2878 and HP15_2879 overlap by 4 nucleotides
HP15_2875: HP15_2875 - urease gamma subunit, at 3,011,824 to 3,012,126
_2875
HP15_2876: HP15_2876 - urease accessory protein UreD, at 3,012,168 to 3,013,064
_2876
HP15_2877: HP15_2877 - ABC transporter, urea, ATP-binding protein, UrtE, at 3,013,061 to 3,013,759
_2877
HP15_2878: HP15_2878 - urea ABC transporter, ATP-binding protein UrtD, at 3,013,759 to 3,014,583
_2878
HP15_2879: HP15_2879 - urea ABC transporter, permease protein UrtC, at 3,014,580 to 3,015,704
_2879
Position (kb)
3013
3014 Strain fitness (log2 ratio)
-2
-1
0
1 at 3012.068 kb on + strand, within HP15_2875 at 3012.207 kb on + strand at 3012.212 kb on + strand at 3012.212 kb on + strand at 3012.212 kb on + strand at 3012.212 kb on + strand at 3012.217 kb on + strand at 3012.222 kb on + strand at 3012.230 kb on - strand at 3012.285 kb on + strand, within HP15_2876 at 3012.388 kb on + strand, within HP15_2876 at 3012.401 kb on + strand, within HP15_2876 at 3012.417 kb on + strand, within HP15_2876 at 3012.433 kb on + strand, within HP15_2876 at 3012.618 kb on + strand, within HP15_2876 at 3012.636 kb on - strand, within HP15_2876 at 3012.694 kb on - strand, within HP15_2876 at 3012.722 kb on + strand, within HP15_2876 at 3012.736 kb on + strand, within HP15_2876 at 3012.744 kb on - strand, within HP15_2876 at 3012.773 kb on + strand, within HP15_2876 at 3012.785 kb on - strand, within HP15_2876 at 3012.812 kb on + strand, within HP15_2876 at 3012.896 kb on - strand, within HP15_2876 at 3012.896 kb on - strand, within HP15_2876 at 3012.896 kb on - strand, within HP15_2876 at 3012.938 kb on - strand, within HP15_2876 at 3012.983 kb on - strand at 3012.983 kb on - strand at 3012.994 kb on + strand at 3013.002 kb on - strand at 3013.002 kb on - strand at 3013.073 kb on - strand at 3013.468 kb on + strand, within HP15_2877 at 3013.491 kb on + strand, within HP15_2877 at 3013.531 kb on + strand, within HP15_2877 at 3013.539 kb on - strand, within HP15_2877 at 3013.549 kb on - strand, within HP15_2877 at 3013.633 kb on + strand, within HP15_2877 at 3013.635 kb on - strand, within HP15_2877 at 3013.652 kb on + strand, within HP15_2877 at 3013.690 kb on + strand at 3013.756 kb on + strand at 3013.848 kb on - strand, within HP15_2878 at 3014.230 kb on - strand, within HP15_2878 at 3014.265 kb on + strand, within HP15_2878 at 3014.447 kb on + strand, within HP15_2878 at 3014.498 kb on - strand, within HP15_2878 at 3014.498 kb on - strand, within HP15_2878 at 3014.498 kb on - strand, within HP15_2878 at 3014.555 kb on + strand at 3014.659 kb on + strand at 3014.667 kb on - strand at 3014.751 kb on - strand, within HP15_2879
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 3,012,068 + HP15_2875 0.81 +0.6 3,012,207 + -0.3 3,012,212 + +0.5 3,012,212 + +0.6 3,012,212 + -0.9 3,012,212 + -0.0 3,012,217 + +0.6 3,012,222 + +0.1 3,012,230 - +0.2 3,012,285 + HP15_2876 0.13 +0.3 3,012,388 + HP15_2876 0.25 +0.7 3,012,401 + HP15_2876 0.26 +0.3 3,012,417 + HP15_2876 0.28 -0.3 3,012,433 + HP15_2876 0.30 -1.9 3,012,618 + HP15_2876 0.50 +0.7 3,012,636 - HP15_2876 0.52 -0.5 3,012,694 - HP15_2876 0.59 -0.9 3,012,722 + HP15_2876 0.62 -0.5 3,012,736 + HP15_2876 0.63 +0.3 3,012,744 - HP15_2876 0.64 -1.0 3,012,773 + HP15_2876 0.67 -0.1 3,012,785 - HP15_2876 0.69 +0.7 3,012,812 + HP15_2876 0.72 +0.7 3,012,896 - HP15_2876 0.81 +0.8 3,012,896 - HP15_2876 0.81 +0.2 3,012,896 - HP15_2876 0.81 +0.9 3,012,938 - HP15_2876 0.86 -0.8 3,012,983 - -0.9 3,012,983 - -0.5 3,012,994 + +0.6 3,013,002 - -0.2 3,013,002 - -1.1 3,013,073 - -1.3 3,013,468 + HP15_2877 0.58 +1.5 3,013,491 + HP15_2877 0.62 +0.1 3,013,531 + HP15_2877 0.67 +0.9 3,013,539 - HP15_2877 0.68 -0.0 3,013,549 - HP15_2877 0.70 +0.3 3,013,633 + HP15_2877 0.82 +0.4 3,013,635 - HP15_2877 0.82 +0.9 3,013,652 + HP15_2877 0.85 +1.2 3,013,690 + +0.2 3,013,756 + -0.3 3,013,848 - HP15_2878 0.11 +0.4 3,014,230 - HP15_2878 0.57 -1.7 3,014,265 + HP15_2878 0.61 +0.9 3,014,447 + HP15_2878 0.83 -1.0 3,014,498 - HP15_2878 0.90 -0.6 3,014,498 - HP15_2878 0.90 -0.5 3,014,498 - HP15_2878 0.90 -0.5 3,014,555 + -1.0 3,014,659 + -0.2 3,014,667 - -0.6 3,014,751 - HP15_2879 0.15 +0.1
Or see this region's nucleotide sequence