Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_272 and HP15_273 are separated by 178 nucleotides HP15_273 and HP15_274 are separated by 65 nucleotides
HP15_272: HP15_272 - biosynthetic arginine decarboxylase, at 262,985 to 264,895
_272
HP15_273: HP15_273 - spermidine synthase, at 265,074 to 265,955
_273
HP15_274: HP15_274 - ammonium/methylammonium permease, at 266,021 to 267,304
_274
Position (kb) 265
266 Strain fitness (log2 ratio) -1
0
1
2
3 at 264.092 kb on + strand, within HP15_272 at 264.092 kb on + strand, within HP15_272 at 264.105 kb on + strand, within HP15_272 at 264.149 kb on + strand, within HP15_272 at 264.167 kb on + strand, within HP15_272 at 264.342 kb on - strand, within HP15_272 at 264.514 kb on + strand, within HP15_272 at 264.629 kb on + strand, within HP15_272 at 264.658 kb on - strand, within HP15_272 at 264.712 kb on - strand at 264.842 kb on + strand at 264.862 kb on - strand at 264.919 kb on - strand at 265.208 kb on - strand, within HP15_273 at 265.301 kb on - strand, within HP15_273 at 265.400 kb on + strand, within HP15_273 at 265.465 kb on + strand, within HP15_273 at 265.524 kb on + strand, within HP15_273 at 265.542 kb on - strand, within HP15_273 at 265.542 kb on - strand, within HP15_273 at 265.707 kb on + strand, within HP15_273 at 265.722 kb on + strand, within HP15_273 at 265.731 kb on - strand, within HP15_273 at 265.734 kb on + strand, within HP15_273 at 265.742 kb on - strand, within HP15_273 at 265.782 kb on + strand, within HP15_273 at 265.789 kb on - strand, within HP15_273 at 265.895 kb on + strand at 265.958 kb on - strand at 266.036 kb on + strand at 266.051 kb on + strand at 266.074 kb on + strand at 266.153 kb on + strand, within HP15_274 at 266.384 kb on + strand, within HP15_274 at 266.477 kb on - strand, within HP15_274 at 266.482 kb on - strand, within HP15_274 at 266.482 kb on - strand, within HP15_274 at 266.686 kb on - strand, within HP15_274 at 266.714 kb on + strand, within HP15_274 at 266.758 kb on - strand, within HP15_274 at 266.769 kb on + strand, within HP15_274 at 266.769 kb on + strand, within HP15_274 at 266.797 kb on - strand, within HP15_274 at 266.881 kb on - strand, within HP15_274
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 264,092 + HP15_272 0.58 +1.6 264,092 + HP15_272 0.58 +1.5 264,105 + HP15_272 0.59 +1.5 264,149 + HP15_272 0.61 +1.1 264,167 + HP15_272 0.62 +2.1 264,342 - HP15_272 0.71 +2.0 264,514 + HP15_272 0.80 +1.4 264,629 + HP15_272 0.86 +1.3 264,658 - HP15_272 0.88 +2.0 264,712 - +1.3 264,842 + +0.8 264,862 - +1.1 264,919 - +0.6 265,208 - HP15_273 0.15 +1.7 265,301 - HP15_273 0.26 +1.5 265,400 + HP15_273 0.37 +2.2 265,465 + HP15_273 0.44 +3.3 265,524 + HP15_273 0.51 +1.7 265,542 - HP15_273 0.53 +1.5 265,542 - HP15_273 0.53 +2.0 265,707 + HP15_273 0.72 +2.1 265,722 + HP15_273 0.73 +1.1 265,731 - HP15_273 0.74 +1.2 265,734 + HP15_273 0.75 +1.5 265,742 - HP15_273 0.76 +1.8 265,782 + HP15_273 0.80 +2.0 265,789 - HP15_273 0.81 +1.2 265,895 + +2.0 265,958 - -0.6 266,036 + -0.2 266,051 + -0.8 266,074 + +1.2 266,153 + HP15_274 0.10 -0.1 266,384 + HP15_274 0.28 -0.3 266,477 - HP15_274 0.36 +0.8 266,482 - HP15_274 0.36 +0.5 266,482 - HP15_274 0.36 +0.7 266,686 - HP15_274 0.52 +0.2 266,714 + HP15_274 0.54 +0.0 266,758 - HP15_274 0.57 -0.2 266,769 + HP15_274 0.58 -0.7 266,769 + HP15_274 0.58 +0.1 266,797 - HP15_274 0.60 -0.1 266,881 - HP15_274 0.67 -0.4
Or see this region's nucleotide sequence