Strain Fitness in Marinobacter adhaerens HP15 around HP15_2575

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2574 and HP15_2575 are separated by 230 nucleotidesHP15_2575 and HP15_2576 overlap by 10 nucleotides HP15_2574: HP15_2574 - alkane 1-monooxygenase, at 2,721,791 to 2,723,059 _2574 HP15_2575: HP15_2575 - enoyl-CoA hydratase/isomerase family protein carnitinyl-CoA, at 2,723,290 to 2,724,078 _2575 HP15_2576: HP15_2576 - acyl-CoA dehydrogenase domain protein, at 2,724,069 to 2,725,871 _2576 Position (kb) 2723 2724 2725Strain fitness (log2 ratio) -2 -1 0 1 2at 2722.492 kb on + strand, within HP15_2574at 2722.492 kb on - strand, within HP15_2574at 2722.517 kb on + strand, within HP15_2574at 2722.572 kb on - strand, within HP15_2574at 2722.632 kb on + strand, within HP15_2574at 2722.636 kb on + strand, within HP15_2574at 2722.687 kb on + strand, within HP15_2574at 2722.962 kb on + strandat 2722.990 kb on + strandat 2722.998 kb on - strandat 2723.003 kb on + strandat 2723.158 kb on - strandat 2723.191 kb on + strandat 2723.298 kb on - strandat 2723.367 kb on - strandat 2723.367 kb on - strandat 2723.386 kb on - strand, within HP15_2575at 2723.404 kb on + strand, within HP15_2575at 2723.412 kb on - strand, within HP15_2575at 2723.446 kb on + strand, within HP15_2575at 2723.454 kb on - strand, within HP15_2575at 2723.541 kb on + strand, within HP15_2575at 2723.712 kb on + strand, within HP15_2575at 2723.720 kb on - strand, within HP15_2575at 2723.720 kb on - strand, within HP15_2575at 2723.727 kb on - strand, within HP15_2575at 2723.738 kb on - strand, within HP15_2575at 2723.768 kb on - strand, within HP15_2575at 2723.840 kb on - strand, within HP15_2575at 2723.869 kb on + strand, within HP15_2575at 2723.872 kb on - strand, within HP15_2575at 2723.909 kb on + strand, within HP15_2575at 2723.917 kb on - strand, within HP15_2575at 2723.917 kb on - strand, within HP15_2575at 2723.997 kb on - strand, within HP15_2575at 2724.165 kb on + strandat 2724.238 kb on - strandat 2724.257 kb on - strand, within HP15_2576at 2724.264 kb on + strand, within HP15_2576at 2724.272 kb on - strand, within HP15_2576at 2724.274 kb on + strand, within HP15_2576at 2724.282 kb on - strand, within HP15_2576at 2724.315 kb on + strand, within HP15_2576at 2724.315 kb on + strand, within HP15_2576at 2724.526 kb on - strand, within HP15_2576at 2724.582 kb on - strand, within HP15_2576at 2724.638 kb on + strand, within HP15_2576at 2724.668 kb on + strand, within HP15_2576at 2724.704 kb on + strand, within HP15_2576at 2724.732 kb on + strand, within HP15_2576at 2724.896 kb on + strand, within HP15_2576at 2724.902 kb on - strand, within HP15_2576at 2724.925 kb on - strand, within HP15_2576at 2724.948 kb on + strand, within HP15_2576at 2725.060 kb on - strand, within HP15_2576at 2725.078 kb on + strand, within HP15_2576

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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2,722,492 + HP15_2574 0.55 +1.2
2,722,492 - HP15_2574 0.55 +0.0
2,722,517 + HP15_2574 0.57 -0.9
2,722,572 - HP15_2574 0.62 +0.5
2,722,632 + HP15_2574 0.66 -2.5
2,722,636 + HP15_2574 0.67 -0.1
2,722,687 + HP15_2574 0.71 -0.3
2,722,962 + -0.5
2,722,990 + -0.2
2,722,998 - +0.5
2,723,003 + -0.3
2,723,158 - +2.1
2,723,191 + +0.5
2,723,298 - +0.7
2,723,367 - -2.3
2,723,367 - +0.4
2,723,386 - HP15_2575 0.12 +0.4
2,723,404 + HP15_2575 0.14 -1.1
2,723,412 - HP15_2575 0.15 -1.1
2,723,446 + HP15_2575 0.20 -0.8
2,723,454 - HP15_2575 0.21 +0.1
2,723,541 + HP15_2575 0.32 -0.7
2,723,712 + HP15_2575 0.53 +0.4
2,723,720 - HP15_2575 0.54 +0.2
2,723,720 - HP15_2575 0.54 +0.5
2,723,727 - HP15_2575 0.55 +1.2
2,723,738 - HP15_2575 0.57 +0.2
2,723,768 - HP15_2575 0.61 -0.1
2,723,840 - HP15_2575 0.70 -0.5
2,723,869 + HP15_2575 0.73 -2.1
2,723,872 - HP15_2575 0.74 +0.7
2,723,909 + HP15_2575 0.78 -0.7
2,723,917 - HP15_2575 0.79 +0.5
2,723,917 - HP15_2575 0.79 +0.0
2,723,997 - HP15_2575 0.90 -0.1
2,724,165 + +0.5
2,724,238 - +0.6
2,724,257 - HP15_2576 0.10 +0.6
2,724,264 + HP15_2576 0.11 +1.5
2,724,272 - HP15_2576 0.11 -0.9
2,724,274 + HP15_2576 0.11 -0.1
2,724,282 - HP15_2576 0.12 +0.0
2,724,315 + HP15_2576 0.14 -0.3
2,724,315 + HP15_2576 0.14 +1.9
2,724,526 - HP15_2576 0.25 +1.0
2,724,582 - HP15_2576 0.28 -0.4
2,724,638 + HP15_2576 0.32 -1.0
2,724,668 + HP15_2576 0.33 +0.5
2,724,704 + HP15_2576 0.35 +0.3
2,724,732 + HP15_2576 0.37 -0.2
2,724,896 + HP15_2576 0.46 +0.1
2,724,902 - HP15_2576 0.46 -0.8
2,724,925 - HP15_2576 0.47 -1.2
2,724,948 + HP15_2576 0.49 -1.5
2,725,060 - HP15_2576 0.55 +0.5
2,725,078 + HP15_2576 0.56 +0.6

Or see this region's nucleotide sequence