Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2422 and HP15_2423 are separated by 486 nucleotides HP15_2423 and HP15_2424 are separated by 129 nucleotides
HP15_2422: HP15_2422 - secreted protein containing DUF1302, at 2,561,686 to 2,563,536
_2422
HP15_2423: HP15_2423 - acyl-CoA thiolase, at 2,564,023 to 2,565,162
_2423
HP15_2424: HP15_2424 - AFG1-family ATPase, at 2,565,292 to 2,566,425
_2424
Position (kb)
2564
2565
2566 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2563.092 kb on - strand, within HP15_2422 at 2563.111 kb on + strand, within HP15_2422 at 2563.168 kb on - strand, within HP15_2422 at 2563.176 kb on + strand, within HP15_2422 at 2563.176 kb on + strand, within HP15_2422 at 2563.337 kb on + strand, within HP15_2422 at 2563.337 kb on + strand, within HP15_2422 at 2563.345 kb on - strand, within HP15_2422 at 2563.345 kb on - strand, within HP15_2422 at 2563.345 kb on - strand, within HP15_2422 at 2563.345 kb on - strand, within HP15_2422 at 2563.414 kb on - strand at 2563.414 kb on - strand at 2563.570 kb on + strand at 2563.583 kb on - strand at 2563.604 kb on - strand at 2563.613 kb on - strand at 2563.930 kb on - strand at 2563.931 kb on - strand at 2563.942 kb on - strand at 2564.052 kb on - strand at 2564.053 kb on - strand at 2564.109 kb on - strand at 2564.141 kb on - strand, within HP15_2423 at 2564.162 kb on + strand, within HP15_2423 at 2564.214 kb on + strand, within HP15_2423 at 2564.345 kb on + strand, within HP15_2423 at 2564.391 kb on - strand, within HP15_2423 at 2564.447 kb on - strand, within HP15_2423 at 2564.609 kb on + strand, within HP15_2423 at 2564.649 kb on + strand, within HP15_2423 at 2564.654 kb on - strand, within HP15_2423 at 2564.686 kb on + strand, within HP15_2423 at 2564.694 kb on - strand, within HP15_2423 at 2564.751 kb on + strand, within HP15_2423 at 2564.759 kb on - strand, within HP15_2423 at 2564.767 kb on + strand, within HP15_2423 at 2564.791 kb on + strand, within HP15_2423 at 2564.848 kb on - strand, within HP15_2423 at 2564.899 kb on - strand, within HP15_2423 at 2565.078 kb on - strand at 2565.085 kb on + strand at 2565.119 kb on - strand at 2565.134 kb on - strand at 2565.136 kb on + strand at 2565.218 kb on + strand at 2565.257 kb on + strand at 2565.265 kb on - strand at 2565.265 kb on - strand at 2565.265 kb on - strand at 2565.272 kb on + strand at 2565.301 kb on + strand at 2565.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 2,563,092 - HP15_2422 0.76 -0.6 2,563,111 + HP15_2422 0.77 -0.0 2,563,168 - HP15_2422 0.80 +0.2 2,563,176 + HP15_2422 0.80 -1.3 2,563,176 + HP15_2422 0.80 -0.4 2,563,337 + HP15_2422 0.89 -1.5 2,563,337 + HP15_2422 0.89 +0.6 2,563,345 - HP15_2422 0.90 +0.4 2,563,345 - HP15_2422 0.90 -0.5 2,563,345 - HP15_2422 0.90 -0.0 2,563,345 - HP15_2422 0.90 +0.4 2,563,414 - -0.2 2,563,414 - -1.4 2,563,570 + +1.0 2,563,583 - -0.4 2,563,604 - +1.0 2,563,613 - +0.1 2,563,930 - +1.6 2,563,931 - -0.4 2,563,942 - +0.1 2,564,052 - +0.1 2,564,053 - -0.3 2,564,109 - -0.9 2,564,141 - HP15_2423 0.10 -0.4 2,564,162 + HP15_2423 0.12 +0.3 2,564,214 + HP15_2423 0.17 -0.1 2,564,345 + HP15_2423 0.28 +0.5 2,564,391 - HP15_2423 0.32 -4.6 2,564,447 - HP15_2423 0.37 +0.6 2,564,609 + HP15_2423 0.51 -0.1 2,564,649 + HP15_2423 0.55 -0.3 2,564,654 - HP15_2423 0.55 +1.3 2,564,686 + HP15_2423 0.58 -0.8 2,564,694 - HP15_2423 0.59 +0.4 2,564,751 + HP15_2423 0.64 -0.1 2,564,759 - HP15_2423 0.65 -0.6 2,564,767 + HP15_2423 0.65 +0.4 2,564,791 + HP15_2423 0.67 -0.3 2,564,848 - HP15_2423 0.72 +0.8 2,564,899 - HP15_2423 0.77 +0.6 2,565,078 - -0.6 2,565,085 + -0.5 2,565,119 - -0.4 2,565,134 - -0.6 2,565,136 + +0.3 2,565,218 + +0.6 2,565,257 + -0.0 2,565,265 - -0.8 2,565,265 - -1.2 2,565,265 - -0.2 2,565,272 + -1.2 2,565,301 + -0.2 2,565,316 - +0.1
Or see this region's nucleotide sequence