Strain Fitness in Marinobacter adhaerens HP15 around HP15_2344

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2343 and HP15_tRNA44 are separated by 53 nucleotidesHP15_tRNA44 and HP15_2344 are separated by 99 nucleotidesHP15_2344 and HP15_2345 are separated by 316 nucleotides HP15_2343: HP15_2343 - amidase signature enzyme, at 2,465,028 to 2,466,515 _2343 HP15_tRNA44: HP15_tRNA44 - tRNA-Met, at 2,466,569 to 2,466,645 _tRNA44 HP15_2344: HP15_2344 - acetyl-CoA acetyltransferase, at 2,466,745 to 2,468,088 _2344 HP15_2345: HP15_2345 - 3-oxoacyl-(acyl-carrier protein) reductase, at 2,468,405 to 2,469,811 _2345 Position (kb) 2466 2467 2468 2469Strain fitness (log2 ratio) -2 -1 0 1at 2465.800 kb on + strand, within HP15_2343at 2465.805 kb on + strand, within HP15_2343at 2465.805 kb on + strand, within HP15_2343at 2465.887 kb on - strand, within HP15_2343at 2465.921 kb on + strand, within HP15_2343at 2465.967 kb on - strand, within HP15_2343at 2465.969 kb on + strand, within HP15_2343at 2466.005 kb on + strand, within HP15_2343at 2466.005 kb on + strand, within HP15_2343at 2466.013 kb on + strand, within HP15_2343at 2466.013 kb on - strand, within HP15_2343at 2466.013 kb on - strand, within HP15_2343at 2466.302 kb on + strand, within HP15_2343at 2466.310 kb on - strand, within HP15_2343at 2466.318 kb on + strand, within HP15_2343at 2466.440 kb on - strandat 2466.465 kb on + strandat 2466.509 kb on - strandat 2466.633 kb on + strand, within HP15_tRNA44at 2466.641 kb on - strandat 2466.641 kb on - strandat 2466.641 kb on - strandat 2466.670 kb on + strandat 2466.713 kb on - strandat 2466.921 kb on + strand, within HP15_2344at 2466.931 kb on + strand, within HP15_2344at 2466.943 kb on + strand, within HP15_2344at 2466.970 kb on + strand, within HP15_2344at 2466.978 kb on + strand, within HP15_2344at 2466.980 kb on + strand, within HP15_2344at 2466.995 kb on - strand, within HP15_2344at 2466.997 kb on + strand, within HP15_2344at 2466.997 kb on + strand, within HP15_2344at 2467.091 kb on - strand, within HP15_2344at 2467.096 kb on - strand, within HP15_2344at 2467.165 kb on + strand, within HP15_2344at 2467.384 kb on + strand, within HP15_2344at 2467.435 kb on + strand, within HP15_2344at 2467.472 kb on - strand, within HP15_2344at 2467.487 kb on - strand, within HP15_2344at 2467.535 kb on + strand, within HP15_2344at 2467.589 kb on + strand, within HP15_2344at 2467.589 kb on + strand, within HP15_2344at 2467.600 kb on + strand, within HP15_2344at 2467.608 kb on - strand, within HP15_2344at 2467.695 kb on + strand, within HP15_2344at 2467.753 kb on - strand, within HP15_2344at 2467.788 kb on + strand, within HP15_2344at 2467.796 kb on - strand, within HP15_2344at 2467.879 kb on + strand, within HP15_2344at 2467.911 kb on + strand, within HP15_2344at 2467.963 kb on - strandat 2467.963 kb on - strandat 2468.073 kb on + strandat 2468.156 kb on + strandat 2468.238 kb on - strandat 2468.296 kb on - strandat 2468.353 kb on - strandat 2468.414 kb on - strandat 2468.414 kb on - strandat 2468.635 kb on + strand, within HP15_2345at 2468.753 kb on + strand, within HP15_2345at 2468.760 kb on - strand, within HP15_2345at 2468.875 kb on + strand, within HP15_2345at 2468.875 kb on - strand, within HP15_2345at 2468.992 kb on - strand, within HP15_2345at 2469.019 kb on - strand, within HP15_2345

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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2,465,800 + HP15_2343 0.52 +0.3
2,465,805 + HP15_2343 0.52 +1.2
2,465,805 + HP15_2343 0.52 -0.0
2,465,887 - HP15_2343 0.58 -0.3
2,465,921 + HP15_2343 0.60 +0.3
2,465,967 - HP15_2343 0.63 +0.9
2,465,969 + HP15_2343 0.63 -0.1
2,466,005 + HP15_2343 0.66 -0.6
2,466,005 + HP15_2343 0.66 +0.6
2,466,013 + HP15_2343 0.66 -0.9
2,466,013 - HP15_2343 0.66 -0.4
2,466,013 - HP15_2343 0.66 -1.3
2,466,302 + HP15_2343 0.86 +0.7
2,466,310 - HP15_2343 0.86 +0.0
2,466,318 + HP15_2343 0.87 +0.2
2,466,440 - -0.1
2,466,465 + +0.7
2,466,509 - -0.3
2,466,633 + HP15_tRNA44 0.83 -2.1
2,466,641 - +1.5
2,466,641 - -0.6
2,466,641 - -0.5
2,466,670 + -1.2
2,466,713 - +0.6
2,466,921 + HP15_2344 0.13 +0.7
2,466,931 + HP15_2344 0.14 +0.9
2,466,943 + HP15_2344 0.15 -0.0
2,466,970 + HP15_2344 0.17 -0.3
2,466,978 + HP15_2344 0.17 +0.1
2,466,980 + HP15_2344 0.17 +0.1
2,466,995 - HP15_2344 0.19 +0.9
2,466,997 + HP15_2344 0.19 +0.2
2,466,997 + HP15_2344 0.19 -0.9
2,467,091 - HP15_2344 0.26 +0.7
2,467,096 - HP15_2344 0.26 +1.1
2,467,165 + HP15_2344 0.31 +0.1
2,467,384 + HP15_2344 0.48 +0.9
2,467,435 + HP15_2344 0.51 +0.4
2,467,472 - HP15_2344 0.54 +0.6
2,467,487 - HP15_2344 0.55 +0.3
2,467,535 + HP15_2344 0.59 +0.8
2,467,589 + HP15_2344 0.63 -0.6
2,467,589 + HP15_2344 0.63 -0.7
2,467,600 + HP15_2344 0.64 -1.8
2,467,608 - HP15_2344 0.64 +0.2
2,467,695 + HP15_2344 0.71 +0.1
2,467,753 - HP15_2344 0.75 +1.2
2,467,788 + HP15_2344 0.78 +0.4
2,467,796 - HP15_2344 0.78 +0.3
2,467,879 + HP15_2344 0.84 -0.5
2,467,911 + HP15_2344 0.87 +1.3
2,467,963 - -0.0
2,467,963 - +1.0
2,468,073 + +0.2
2,468,156 + +0.7
2,468,238 - -0.6
2,468,296 - -0.3
2,468,353 - +0.7
2,468,414 - +0.2
2,468,414 - -1.1
2,468,635 + HP15_2345 0.16 -0.3
2,468,753 + HP15_2345 0.25 +0.4
2,468,760 - HP15_2345 0.25 +0.8
2,468,875 + HP15_2345 0.33 -1.1
2,468,875 - HP15_2345 0.33 -0.9
2,468,992 - HP15_2345 0.42 -0.7
2,469,019 - HP15_2345 0.44 -0.2

Or see this region's nucleotide sequence