Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2210 and HP15_2211 overlap by 4 nucleotides HP15_2211 and HP15_2212 are separated by 160 nucleotides HP15_2212 and HP15_2213 are separated by 133 nucleotides HP15_2213 and HP15_2214 are separated by 18 nucleotides
HP15_2210: HP15_2210 - 3-oxoacyl-(acyl-carrier-protein) synthase II, at 2,329,127 to 2,329,948
_2210
HP15_2211: HP15_2211 - 3-oxoacyl-(acyl carrier protein) synthase II, at 2,329,945 to 2,330,343
_2211
HP15_2212: HP15_2212 - Acyl carrier protein, at 2,330,504 to 2,330,737
_2212
HP15_2213: HP15_2213 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 2,330,871 to 2,331,614
_2213
HP15_2214: HP15_2214 - acyl-carrier-protein S-malonyltransferase, at 2,331,633 to 2,332,529
_2214
Position (kb)
2330
2331 Strain fitness (log2 ratio)
-2
-1
0
1 at 2329.560 kb on + strand, within HP15_2210 at 2329.565 kb on + strand, within HP15_2210 at 2329.613 kb on - strand, within HP15_2210 at 2329.758 kb on + strand, within HP15_2210 at 2329.829 kb on + strand, within HP15_2210 at 2329.891 kb on + strand at 2330.025 kb on + strand, within HP15_2211 at 2330.086 kb on - strand, within HP15_2211 at 2330.098 kb on + strand, within HP15_2211 at 2330.241 kb on - strand, within HP15_2211 at 2330.328 kb on - strand at 2330.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 2,329,560 + HP15_2210 0.53 -1.6 2,329,565 + HP15_2210 0.53 -1.5 2,329,613 - HP15_2210 0.59 +0.8 2,329,758 + HP15_2210 0.77 -0.4 2,329,829 + HP15_2210 0.85 -2.0 2,329,891 + -1.2 2,330,025 + HP15_2211 0.20 -1.4 2,330,086 - HP15_2211 0.35 +0.6 2,330,098 + HP15_2211 0.38 -1.6 2,330,241 - HP15_2211 0.74 -0.6 2,330,328 - -0.1 2,330,876 - +0.8
Or see this region's nucleotide sequence