Strain Fitness in Marinobacter adhaerens HP15 around HP15_2212

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2210 and HP15_2211 overlap by 4 nucleotidesHP15_2211 and HP15_2212 are separated by 160 nucleotidesHP15_2212 and HP15_2213 are separated by 133 nucleotidesHP15_2213 and HP15_2214 are separated by 18 nucleotides HP15_2210: HP15_2210 - 3-oxoacyl-(acyl-carrier-protein) synthase II, at 2,329,127 to 2,329,948 _2210 HP15_2211: HP15_2211 - 3-oxoacyl-(acyl carrier protein) synthase II, at 2,329,945 to 2,330,343 _2211 HP15_2212: HP15_2212 - Acyl carrier protein, at 2,330,504 to 2,330,737 _2212 HP15_2213: HP15_2213 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 2,330,871 to 2,331,614 _2213 HP15_2214: HP15_2214 - acyl-carrier-protein S-malonyltransferase, at 2,331,633 to 2,332,529 _2214 Position (kb) 2330 2331Strain fitness (log2 ratio) -2 -1 0 1at 2329.560 kb on + strand, within HP15_2210at 2329.565 kb on + strand, within HP15_2210at 2329.613 kb on - strand, within HP15_2210at 2329.758 kb on + strand, within HP15_2210at 2329.829 kb on + strand, within HP15_2210at 2329.891 kb on + strandat 2330.025 kb on + strand, within HP15_2211at 2330.086 kb on - strand, within HP15_2211at 2330.098 kb on + strand, within HP15_2211at 2330.241 kb on - strand, within HP15_2211at 2330.328 kb on - strandat 2330.876 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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2,329,560 + HP15_2210 0.53 -1.6
2,329,565 + HP15_2210 0.53 -1.5
2,329,613 - HP15_2210 0.59 +0.8
2,329,758 + HP15_2210 0.77 -0.4
2,329,829 + HP15_2210 0.85 -2.0
2,329,891 + -1.2
2,330,025 + HP15_2211 0.20 -1.4
2,330,086 - HP15_2211 0.35 +0.6
2,330,098 + HP15_2211 0.38 -1.6
2,330,241 - HP15_2211 0.74 -0.6
2,330,328 - -0.1
2,330,876 - +0.8

Or see this region's nucleotide sequence