Strain Fitness in Marinobacter adhaerens HP15 around HP15_2168

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2167 and HP15_2168 are separated by 185 nucleotidesHP15_2168 and HP15_2169 are separated by 302 nucleotides HP15_2167: HP15_2167 - transcriptional repressor for the dissimilation of sn-glycerol 3-phosphate, DeoR family protein, at 2,275,553 to 2,276,309 _2167 HP15_2168: HP15_2168 - FAD dependent oxidoreductase, at 2,276,495 to 2,278,018 _2168 HP15_2169: HP15_2169 - conserved hypothetical protein, secreted, at 2,278,321 to 2,279,448 _2169 Position (kb) 2276 2277 2278 2279Strain fitness (log2 ratio) -1 0 1at 2275.614 kb on + strandat 2275.643 kb on - strand, within HP15_2167at 2275.649 kb on + strand, within HP15_2167at 2275.649 kb on + strand, within HP15_2167at 2275.708 kb on + strand, within HP15_2167at 2275.828 kb on - strand, within HP15_2167at 2276.029 kb on - strand, within HP15_2167at 2276.188 kb on - strand, within HP15_2167at 2276.295 kb on - strandat 2278.009 kb on - strandat 2278.021 kb on - strandat 2278.033 kb on + strandat 2278.033 kb on + strandat 2278.455 kb on - strand, within HP15_2169at 2278.460 kb on - strand, within HP15_2169at 2278.486 kb on + strand, within HP15_2169at 2278.503 kb on + strand, within HP15_2169at 2278.607 kb on + strand, within HP15_2169at 2278.607 kb on + strand, within HP15_2169at 2278.777 kb on - strand, within HP15_2169at 2278.853 kb on + strand, within HP15_2169

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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2,275,614 + +0.6
2,275,643 - HP15_2167 0.12 +0.2
2,275,649 + HP15_2167 0.13 -1.1
2,275,649 + HP15_2167 0.13 +1.7
2,275,708 + HP15_2167 0.20 +0.8
2,275,828 - HP15_2167 0.36 +0.4
2,276,029 - HP15_2167 0.63 +0.9
2,276,188 - HP15_2167 0.84 +0.6
2,276,295 - -0.7
2,278,009 - +0.6
2,278,021 - +0.9
2,278,033 + +0.8
2,278,033 + +0.7
2,278,455 - HP15_2169 0.12 -0.2
2,278,460 - HP15_2169 0.12 +0.5
2,278,486 + HP15_2169 0.15 -0.7
2,278,503 + HP15_2169 0.16 -0.2
2,278,607 + HP15_2169 0.25 -0.3
2,278,607 + HP15_2169 0.25 -1.7
2,278,777 - HP15_2169 0.40 +0.3
2,278,853 + HP15_2169 0.47 -0.3

Or see this region's nucleotide sequence