Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2003 and HP15_2004 overlap by 1 nucleotides HP15_2004 and HP15_2005 are separated by 34 nucleotides HP15_2005 and HP15_2006 are separated by 13 nucleotides HP15_2006 and HP15_2007 overlap by 1 nucleotides HP15_2007 and HP15_2008 are separated by 131 nucleotides HP15_2008 and HP15_2009 overlap by 1 nucleotides
HP15_2003: HP15_2003 - hypothetical protein, at 2,106,412 to 2,106,843
_2003
HP15_2004: HP15_2004 - membrane or secreted protein, at 2,106,843 to 2,106,971
_2004
HP15_2005: HP15_2005 - hypothetical protein, at 2,107,006 to 2,107,449
_2005
HP15_2006: HP15_2006 - hypothetical protein, at 2,107,463 to 2,107,666
_2006
HP15_2007: HP15_2007 - prophage lambda integrase, at 2,107,666 to 2,108,787
_2007
HP15_2008: HP15_2008 - conserved hypothetical protein, at 2,108,919 to 2,109,446
_2008
HP15_2009: HP15_2009 - conserved hypothetical protein, at 2,109,446 to 2,109,859
_2009
Position (kb)
2107
2108
2109 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2106.741 kb on - strand, within HP15_2003 at 2106.966 kb on + strand at 2107.090 kb on - strand, within HP15_2005 at 2107.218 kb on - strand at 2107.270 kb on - strand, within HP15_2005 at 2107.329 kb on + strand, within HP15_2005 at 2107.344 kb on - strand, within HP15_2005 at 2107.468 kb on - strand at 2107.471 kb on + strand at 2107.471 kb on + strand at 2107.527 kb on + strand, within HP15_2006 at 2107.535 kb on - strand, within HP15_2006 at 2107.588 kb on + strand, within HP15_2006 at 2108.039 kb on - strand, within HP15_2007 at 2108.093 kb on + strand, within HP15_2007 at 2108.134 kb on + strand, within HP15_2007 at 2108.143 kb on - strand, within HP15_2007 at 2108.210 kb on + strand, within HP15_2007 at 2108.216 kb on + strand, within HP15_2007 at 2108.216 kb on + strand, within HP15_2007 at 2108.256 kb on - strand, within HP15_2007 at 2108.268 kb on - strand, within HP15_2007 at 2108.347 kb on + strand, within HP15_2007 at 2108.348 kb on - strand, within HP15_2007 at 2108.386 kb on + strand, within HP15_2007 at 2108.416 kb on - strand, within HP15_2007 at 2108.433 kb on - strand, within HP15_2007 at 2108.525 kb on + strand, within HP15_2007 at 2108.533 kb on + strand, within HP15_2007 at 2108.534 kb on - strand, within HP15_2007 at 2108.546 kb on + strand, within HP15_2007 at 2108.546 kb on - strand, within HP15_2007 at 2108.647 kb on - strand, within HP15_2007 at 2108.724 kb on + strand at 2108.738 kb on + strand at 2108.746 kb on - strand at 2108.999 kb on + strand, within HP15_2008 at 2109.152 kb on + strand, within HP15_2008 at 2109.269 kb on - strand, within HP15_2008
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 2,106,741 - HP15_2003 0.76 +0.5 2,106,966 + +0.9 2,107,090 - HP15_2005 0.19 +0.6 2,107,218 - +0.9 2,107,270 - HP15_2005 0.59 -0.3 2,107,329 + HP15_2005 0.73 -1.4 2,107,344 - HP15_2005 0.76 -0.2 2,107,468 - -0.2 2,107,471 + +0.2 2,107,471 + -0.5 2,107,527 + HP15_2006 0.31 +0.4 2,107,535 - HP15_2006 0.35 +0.2 2,107,588 + HP15_2006 0.61 +0.2 2,108,039 - HP15_2007 0.33 -0.4 2,108,093 + HP15_2007 0.38 +0.4 2,108,134 + HP15_2007 0.42 -0.4 2,108,143 - HP15_2007 0.43 +0.2 2,108,210 + HP15_2007 0.48 -0.0 2,108,216 + HP15_2007 0.49 -0.2 2,108,216 + HP15_2007 0.49 +0.8 2,108,256 - HP15_2007 0.53 +0.5 2,108,268 - HP15_2007 0.54 +0.5 2,108,347 + HP15_2007 0.61 +0.3 2,108,348 - HP15_2007 0.61 -1.8 2,108,386 + HP15_2007 0.64 -0.4 2,108,416 - HP15_2007 0.67 -0.9 2,108,433 - HP15_2007 0.68 -1.7 2,108,525 + HP15_2007 0.77 -0.3 2,108,533 + HP15_2007 0.77 -0.6 2,108,534 - HP15_2007 0.77 -0.9 2,108,546 + HP15_2007 0.78 +0.0 2,108,546 - HP15_2007 0.78 +0.3 2,108,647 - HP15_2007 0.87 -0.3 2,108,724 + -0.7 2,108,738 + -0.9 2,108,746 - -0.3 2,108,999 + HP15_2008 0.15 +1.3 2,109,152 + HP15_2008 0.44 +2.3 2,109,269 - HP15_2008 0.66 -0.1
Or see this region's nucleotide sequence