Strain Fitness in Marinobacter adhaerens HP15 around HP15_2007

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2003 and HP15_2004 overlap by 1 nucleotidesHP15_2004 and HP15_2005 are separated by 34 nucleotidesHP15_2005 and HP15_2006 are separated by 13 nucleotidesHP15_2006 and HP15_2007 overlap by 1 nucleotidesHP15_2007 and HP15_2008 are separated by 131 nucleotidesHP15_2008 and HP15_2009 overlap by 1 nucleotides HP15_2003: HP15_2003 - hypothetical protein, at 2,106,412 to 2,106,843 _2003 HP15_2004: HP15_2004 - membrane or secreted protein, at 2,106,843 to 2,106,971 _2004 HP15_2005: HP15_2005 - hypothetical protein, at 2,107,006 to 2,107,449 _2005 HP15_2006: HP15_2006 - hypothetical protein, at 2,107,463 to 2,107,666 _2006 HP15_2007: HP15_2007 - prophage lambda integrase, at 2,107,666 to 2,108,787 _2007 HP15_2008: HP15_2008 - conserved hypothetical protein, at 2,108,919 to 2,109,446 _2008 HP15_2009: HP15_2009 - conserved hypothetical protein, at 2,109,446 to 2,109,859 _2009 Position (kb) 2107 2108 2109Strain fitness (log2 ratio) -2 -1 0 1 2at 2106.741 kb on - strand, within HP15_2003at 2106.966 kb on + strandat 2107.090 kb on - strand, within HP15_2005at 2107.218 kb on - strandat 2107.270 kb on - strand, within HP15_2005at 2107.329 kb on + strand, within HP15_2005at 2107.344 kb on - strand, within HP15_2005at 2107.468 kb on - strandat 2107.471 kb on + strandat 2107.471 kb on + strandat 2107.527 kb on + strand, within HP15_2006at 2107.535 kb on - strand, within HP15_2006at 2107.588 kb on + strand, within HP15_2006at 2108.039 kb on - strand, within HP15_2007at 2108.093 kb on + strand, within HP15_2007at 2108.134 kb on + strand, within HP15_2007at 2108.143 kb on - strand, within HP15_2007at 2108.210 kb on + strand, within HP15_2007at 2108.216 kb on + strand, within HP15_2007at 2108.216 kb on + strand, within HP15_2007at 2108.256 kb on - strand, within HP15_2007at 2108.268 kb on - strand, within HP15_2007at 2108.347 kb on + strand, within HP15_2007at 2108.348 kb on - strand, within HP15_2007at 2108.386 kb on + strand, within HP15_2007at 2108.416 kb on - strand, within HP15_2007at 2108.433 kb on - strand, within HP15_2007at 2108.525 kb on + strand, within HP15_2007at 2108.533 kb on + strand, within HP15_2007at 2108.534 kb on - strand, within HP15_2007at 2108.546 kb on + strand, within HP15_2007at 2108.546 kb on - strand, within HP15_2007at 2108.647 kb on - strand, within HP15_2007at 2108.724 kb on + strandat 2108.738 kb on + strandat 2108.746 kb on - strandat 2108.999 kb on + strand, within HP15_2008at 2109.152 kb on + strand, within HP15_2008at 2109.269 kb on - strand, within HP15_2008

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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2,106,741 - HP15_2003 0.76 +0.5
2,106,966 + +0.9
2,107,090 - HP15_2005 0.19 +0.6
2,107,218 - +0.9
2,107,270 - HP15_2005 0.59 -0.3
2,107,329 + HP15_2005 0.73 -1.4
2,107,344 - HP15_2005 0.76 -0.2
2,107,468 - -0.2
2,107,471 + +0.2
2,107,471 + -0.5
2,107,527 + HP15_2006 0.31 +0.4
2,107,535 - HP15_2006 0.35 +0.2
2,107,588 + HP15_2006 0.61 +0.2
2,108,039 - HP15_2007 0.33 -0.4
2,108,093 + HP15_2007 0.38 +0.4
2,108,134 + HP15_2007 0.42 -0.4
2,108,143 - HP15_2007 0.43 +0.2
2,108,210 + HP15_2007 0.48 -0.0
2,108,216 + HP15_2007 0.49 -0.2
2,108,216 + HP15_2007 0.49 +0.8
2,108,256 - HP15_2007 0.53 +0.5
2,108,268 - HP15_2007 0.54 +0.5
2,108,347 + HP15_2007 0.61 +0.3
2,108,348 - HP15_2007 0.61 -1.8
2,108,386 + HP15_2007 0.64 -0.4
2,108,416 - HP15_2007 0.67 -0.9
2,108,433 - HP15_2007 0.68 -1.7
2,108,525 + HP15_2007 0.77 -0.3
2,108,533 + HP15_2007 0.77 -0.6
2,108,534 - HP15_2007 0.77 -0.9
2,108,546 + HP15_2007 0.78 +0.0
2,108,546 - HP15_2007 0.78 +0.3
2,108,647 - HP15_2007 0.87 -0.3
2,108,724 + -0.7
2,108,738 + -0.9
2,108,746 - -0.3
2,108,999 + HP15_2008 0.15 +1.3
2,109,152 + HP15_2008 0.44 +2.3
2,109,269 - HP15_2008 0.66 -0.1

Or see this region's nucleotide sequence