Strain Fitness in Marinobacter adhaerens HP15 around HP15_1932

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1931 and HP15_1932 are separated by 73 nucleotidesHP15_1932 and HP15_1933 are separated by 62 nucleotidesHP15_1933 and HP15_1934 are separated by 111 nucleotides HP15_1931: HP15_1931 - 2-methylcitrate synthase/citrate synthase II, at 2,050,162 to 2,051,292 _1931 HP15_1932: HP15_1932 - methylisocitrate lyase 2, at 2,051,366 to 2,052,253 _1932 HP15_1933: HP15_1933 - transcriptional regulator, GntR family, at 2,052,316 to 2,052,996 _1933 HP15_1934: HP15_1934 - periplasmic glucan biosynthesis protein MdoG, at 2,053,108 to 2,054,694 _1934 Position (kb) 2051 2052 2053Strain fitness (log2 ratio) -1 0 1at 2050.395 kb on - strand, within HP15_1931at 2050.467 kb on + strand, within HP15_1931at 2050.552 kb on + strand, within HP15_1931at 2050.572 kb on + strand, within HP15_1931at 2050.580 kb on - strand, within HP15_1931at 2050.622 kb on - strand, within HP15_1931at 2050.969 kb on + strand, within HP15_1931at 2051.199 kb on + strandat 2051.202 kb on - strandat 2051.207 kb on - strandat 2051.557 kb on - strand, within HP15_1932at 2052.481 kb on - strand, within HP15_1933at 2052.494 kb on + strand, within HP15_1933at 2052.584 kb on + strand, within HP15_1933at 2052.624 kb on - strand, within HP15_1933at 2052.840 kb on - strand, within HP15_1933at 2052.850 kb on - strand, within HP15_1933at 2052.962 kb on + strandat 2052.970 kb on - strandat 2053.193 kb on - strandat 2053.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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2,050,395 - HP15_1931 0.21 -1.1
2,050,467 + HP15_1931 0.27 -0.7
2,050,552 + HP15_1931 0.34 -0.1
2,050,572 + HP15_1931 0.36 -0.8
2,050,580 - HP15_1931 0.37 -0.2
2,050,622 - HP15_1931 0.41 -0.1
2,050,969 + HP15_1931 0.71 -1.5
2,051,199 + -1.4
2,051,202 - +0.4
2,051,207 - +1.3
2,051,557 - HP15_1932 0.22 +0.5
2,052,481 - HP15_1933 0.24 +0.8
2,052,494 + HP15_1933 0.26 +0.5
2,052,584 + HP15_1933 0.39 +1.0
2,052,624 - HP15_1933 0.45 +0.4
2,052,840 - HP15_1933 0.77 -0.9
2,052,850 - HP15_1933 0.78 +1.1
2,052,962 + -0.2
2,052,970 - +0.3
2,053,193 - +0.3
2,053,235 + +1.1

Or see this region's nucleotide sequence