Strain Fitness in Marinobacter adhaerens HP15 around HP15_1516

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1515 and HP15_1516 are separated by 116 nucleotidesHP15_1516 and HP15_1517 are separated by 478 nucleotidesHP15_1517 and HP15_1518 overlap by 10 nucleotides HP15_1515: HP15_1515 - 6-phosphogluconate dehydrogenase domain protein, at 1,594,748 to 1,595,620 _1515 HP15_1516: HP15_1516 - type II citrate synthase, at 1,595,737 to 1,597,011 _1516 HP15_1517: HP15_1517 - succinate dehydrogenase, cytochrome b560 subunit, at 1,597,490 to 1,597,867 _1517 HP15_1518: HP15_1518 - succinate dehydrogenase, hydrophobic membrane anchor, at 1,597,858 to 1,598,205 _1518 Position (kb) 1595 1596 1597 1598Strain fitness (log2 ratio) -1 0 1at 1594.769 kb on + strandat 1594.987 kb on - strand, within HP15_1515at 1595.048 kb on + strand, within HP15_1515at 1595.189 kb on + strand, within HP15_1515at 1595.189 kb on + strand, within HP15_1515at 1595.192 kb on - strand, within HP15_1515at 1595.347 kb on + strand, within HP15_1515at 1595.355 kb on - strand, within HP15_1515at 1595.437 kb on - strand, within HP15_1515at 1595.437 kb on - strand, within HP15_1515at 1595.511 kb on + strand, within HP15_1515at 1595.632 kb on + strandat 1595.660 kb on + strandat 1595.660 kb on + strandat 1595.678 kb on - strandat 1597.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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1,594,769 + +1.4
1,594,987 - HP15_1515 0.27 -0.0
1,595,048 + HP15_1515 0.34 +0.5
1,595,189 + HP15_1515 0.51 +0.9
1,595,189 + HP15_1515 0.51 +0.2
1,595,192 - HP15_1515 0.51 +0.7
1,595,347 + HP15_1515 0.69 +0.2
1,595,355 - HP15_1515 0.70 +1.0
1,595,437 - HP15_1515 0.79 +1.0
1,595,437 - HP15_1515 0.79 +0.9
1,595,511 + HP15_1515 0.87 -1.2
1,595,632 + -0.4
1,595,660 + +0.5
1,595,660 + +0.4
1,595,678 - -0.1
1,597,224 + -0.5

Or see this region's nucleotide sequence