Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1238 and HP15_1239 are separated by 275 nucleotides HP15_1239 and HP15_1240 are separated by 416 nucleotides HP15_1240 and HP15_1241 are separated by 9 nucleotides
HP15_1238: HP15_1238 - transglycosylase, Slt family protein, at 1,288,695 to 1,290,215
_1238
HP15_1239: HP15_1239 - phosphoribosylformylglycinamidine synthase, at 1,290,491 to 1,294,396
_1239
HP15_1240: HP15_1240 - conserved hypothetical protein, at 1,294,813 to 1,295,124
_1240
HP15_1241: HP15_1241 - ADP-ribose pyrophosphatase, at 1,295,134 to 1,295,685
_1241
Position (kb)
1290
1291
1292
1293
1294
1295 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1289.508 kb on - strand, within HP15_1238 at 1289.508 kb on - strand, within HP15_1238 at 1289.553 kb on + strand, within HP15_1238 at 1289.580 kb on - strand, within HP15_1238 at 1289.672 kb on + strand, within HP15_1238 at 1289.672 kb on + strand, within HP15_1238 at 1289.738 kb on - strand, within HP15_1238 at 1289.740 kb on - strand, within HP15_1238 at 1289.796 kb on - strand, within HP15_1238 at 1289.796 kb on - strand, within HP15_1238 at 1289.877 kb on + strand, within HP15_1238 at 1289.880 kb on - strand, within HP15_1238 at 1289.972 kb on + strand, within HP15_1238 at 1289.972 kb on + strand, within HP15_1238 at 1289.980 kb on - strand, within HP15_1238 at 1290.112 kb on + strand at 1290.112 kb on + strand at 1290.112 kb on + strand at 1290.112 kb on + strand at 1290.120 kb on - strand at 1290.120 kb on - strand at 1290.120 kb on - strand at 1290.120 kb on - strand at 1290.120 kb on - strand at 1290.120 kb on - strand at 1290.151 kb on - strand at 1290.261 kb on - strand at 1290.268 kb on + strand at 1290.280 kb on - strand at 1290.285 kb on - strand at 1290.315 kb on - strand at 1290.336 kb on + strand at 1290.403 kb on + strand at 1290.416 kb on - strand at 1294.716 kb on + strand at 1294.762 kb on - strand at 1294.768 kb on + strand at 1294.837 kb on - strand at 1295.078 kb on - strand, within HP15_1240 at 1295.090 kb on - strand, within HP15_1240 at 1295.197 kb on + strand, within HP15_1241 at 1295.323 kb on + strand, within HP15_1241 at 1295.323 kb on + strand, within HP15_1241 at 1295.363 kb on - strand, within HP15_1241
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 1,289,508 - HP15_1238 0.53 -0.4 1,289,508 - HP15_1238 0.53 +0.4 1,289,553 + HP15_1238 0.56 -0.3 1,289,580 - HP15_1238 0.58 -0.7 1,289,672 + HP15_1238 0.64 +0.2 1,289,672 + HP15_1238 0.64 -1.1 1,289,738 - HP15_1238 0.69 -0.7 1,289,740 - HP15_1238 0.69 -0.7 1,289,796 - HP15_1238 0.72 +0.7 1,289,796 - HP15_1238 0.72 +0.9 1,289,877 + HP15_1238 0.78 -0.1 1,289,880 - HP15_1238 0.78 -0.5 1,289,972 + HP15_1238 0.84 +0.3 1,289,972 + HP15_1238 0.84 -0.7 1,289,980 - HP15_1238 0.84 -0.7 1,290,112 + -0.7 1,290,112 + +0.9 1,290,112 + -0.0 1,290,112 + +0.3 1,290,120 - -1.2 1,290,120 - -0.4 1,290,120 - -0.2 1,290,120 - +0.1 1,290,120 - -0.5 1,290,120 - +0.0 1,290,151 - +0.6 1,290,261 - -0.7 1,290,268 + +0.9 1,290,280 - -0.0 1,290,285 - +0.0 1,290,315 - +0.6 1,290,336 + -1.3 1,290,403 + +0.8 1,290,416 - -3.0 1,294,716 + +0.4 1,294,762 - +0.5 1,294,768 + -0.4 1,294,837 - +0.2 1,295,078 - HP15_1240 0.85 -0.5 1,295,090 - HP15_1240 0.89 -0.2 1,295,197 + HP15_1241 0.11 +0.1 1,295,323 + HP15_1241 0.34 -0.2 1,295,323 + HP15_1241 0.34 +0.4 1,295,363 - HP15_1241 0.41 -0.6
Or see this region's nucleotide sequence