Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1232 and HP15_1233 are separated by 29 nucleotides HP15_1233 and HP15_1234 are separated by 188 nucleotides HP15_1234 and HP15_1235 are separated by 13 nucleotides HP15_1235 and HP15_1236 overlap by 4 nucleotides
HP15_1232: HP15_1232 - fatty acid oxidation complex subunit alpha, at 1,281,708 to 1,283,858
_1232
HP15_1233: HP15_1233 - acetyl-CoA acetyltransferase, at 1,283,888 to 1,285,096
_1233
HP15_1234: HP15_1234 - conserved hypothetical protein, at 1,285,285 to 1,285,548
_1234
HP15_1235: HP15_1235 - conserved hypothetical protein, at 1,285,562 to 1,285,900
_1235
HP15_1236: HP15_1236 - conserved hypothetical protein, at 1,285,897 to 1,288,026
_1236
Position (kb)
1283
1284
1285
1286 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1283.187 kb on - strand, within HP15_1232 at 1283.204 kb on + strand, within HP15_1232 at 1283.205 kb on + strand, within HP15_1232 at 1283.213 kb on - strand, within HP15_1232 at 1283.267 kb on - strand, within HP15_1232 at 1283.325 kb on - strand, within HP15_1232 at 1283.397 kb on - strand, within HP15_1232 at 1283.458 kb on - strand, within HP15_1232 at 1283.646 kb on - strand at 1283.743 kb on + strand at 1283.822 kb on - strand at 1283.825 kb on + strand at 1283.825 kb on + strand at 1283.846 kb on + strand at 1283.886 kb on + strand at 1283.894 kb on - strand at 1283.894 kb on - strand at 1284.034 kb on + strand, within HP15_1233 at 1284.034 kb on - strand, within HP15_1233 at 1284.121 kb on - strand, within HP15_1233 at 1284.122 kb on - strand, within HP15_1233 at 1284.214 kb on + strand, within HP15_1233 at 1284.215 kb on - strand, within HP15_1233 at 1284.222 kb on - strand, within HP15_1233 at 1284.222 kb on - strand, within HP15_1233 at 1284.224 kb on + strand, within HP15_1233 at 1284.263 kb on + strand, within HP15_1233 at 1284.270 kb on + strand, within HP15_1233 at 1284.278 kb on - strand, within HP15_1233 at 1284.278 kb on - strand, within HP15_1233 at 1284.330 kb on - strand, within HP15_1233 at 1284.438 kb on - strand, within HP15_1233 at 1284.468 kb on + strand, within HP15_1233 at 1284.508 kb on + strand, within HP15_1233 at 1284.522 kb on + strand, within HP15_1233 at 1284.616 kb on + strand, within HP15_1233 at 1284.616 kb on - strand, within HP15_1233 at 1284.634 kb on + strand, within HP15_1233 at 1284.637 kb on - strand, within HP15_1233 at 1284.642 kb on - strand, within HP15_1233 at 1284.655 kb on - strand, within HP15_1233 at 1284.736 kb on + strand, within HP15_1233 at 1284.744 kb on - strand, within HP15_1233 at 1284.830 kb on + strand, within HP15_1233 at 1284.843 kb on - strand, within HP15_1233 at 1284.926 kb on + strand, within HP15_1233 at 1284.939 kb on + strand, within HP15_1233 at 1284.954 kb on + strand, within HP15_1233 at 1284.960 kb on + strand, within HP15_1233 at 1284.981 kb on + strand at 1284.981 kb on - strand at 1285.010 kb on + strand at 1285.059 kb on - strand at 1285.059 kb on - strand at 1285.068 kb on + strand at 1285.085 kb on - strand at 1285.179 kb on - strand at 1285.179 kb on - strand at 1285.188 kb on + strand at 1285.274 kb on - strand at 1285.346 kb on - strand, within HP15_1234 at 1285.357 kb on - strand, within HP15_1234 at 1285.407 kb on - strand, within HP15_1234 at 1285.407 kb on - strand, within HP15_1234 at 1285.468 kb on + strand, within HP15_1234 at 1285.542 kb on - strand at 1285.543 kb on + strand at 1285.632 kb on + strand, within HP15_1235 at 1285.694 kb on - strand, within HP15_1235 at 1285.774 kb on - strand, within HP15_1235 at 1285.845 kb on + strand, within HP15_1235 at 1285.845 kb on + strand, within HP15_1235 at 1285.850 kb on + strand, within HP15_1235 at 1285.853 kb on - strand, within HP15_1235 at 1285.853 kb on - strand, within HP15_1235 at 1285.858 kb on - strand, within HP15_1235 at 1285.940 kb on + strand at 1285.994 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 1,283,187 - HP15_1232 0.69 -0.8 1,283,204 + HP15_1232 0.70 -0.3 1,283,205 + HP15_1232 0.70 -2.5 1,283,213 - HP15_1232 0.70 -0.7 1,283,267 - HP15_1232 0.72 +0.1 1,283,325 - HP15_1232 0.75 +0.5 1,283,397 - HP15_1232 0.79 -0.1 1,283,458 - HP15_1232 0.81 +0.1 1,283,646 - -0.0 1,283,743 + -0.3 1,283,822 - +0.9 1,283,825 + -1.3 1,283,825 + -0.5 1,283,846 + -0.5 1,283,886 + +0.6 1,283,894 - -0.3 1,283,894 - -1.5 1,284,034 + HP15_1233 0.12 -0.4 1,284,034 - HP15_1233 0.12 +0.3 1,284,121 - HP15_1233 0.19 +0.6 1,284,122 - HP15_1233 0.19 +1.1 1,284,214 + HP15_1233 0.27 +0.9 1,284,215 - HP15_1233 0.27 +0.7 1,284,222 - HP15_1233 0.28 -0.2 1,284,222 - HP15_1233 0.28 +0.4 1,284,224 + HP15_1233 0.28 -1.0 1,284,263 + HP15_1233 0.31 +0.5 1,284,270 + HP15_1233 0.32 -0.3 1,284,278 - HP15_1233 0.32 +0.4 1,284,278 - HP15_1233 0.32 -0.2 1,284,330 - HP15_1233 0.37 +1.1 1,284,438 - HP15_1233 0.45 +0.1 1,284,468 + HP15_1233 0.48 -0.6 1,284,508 + HP15_1233 0.51 -0.3 1,284,522 + HP15_1233 0.52 +0.7 1,284,616 + HP15_1233 0.60 +0.5 1,284,616 - HP15_1233 0.60 +0.8 1,284,634 + HP15_1233 0.62 +0.6 1,284,637 - HP15_1233 0.62 +0.7 1,284,642 - HP15_1233 0.62 +0.6 1,284,655 - HP15_1233 0.63 +0.3 1,284,736 + HP15_1233 0.70 +1.1 1,284,744 - HP15_1233 0.71 -0.5 1,284,830 + HP15_1233 0.78 +0.2 1,284,843 - HP15_1233 0.79 +1.2 1,284,926 + HP15_1233 0.86 +0.3 1,284,939 + HP15_1233 0.87 +0.5 1,284,954 + HP15_1233 0.88 -0.9 1,284,960 + HP15_1233 0.89 +0.5 1,284,981 + +1.1 1,284,981 - +0.5 1,285,010 + +0.6 1,285,059 - +0.5 1,285,059 - -0.2 1,285,068 + -0.4 1,285,085 - +1.0 1,285,179 - -0.2 1,285,179 - -0.5 1,285,188 + +0.9 1,285,274 - +0.8 1,285,346 - HP15_1234 0.23 +0.6 1,285,357 - HP15_1234 0.27 -0.1 1,285,407 - HP15_1234 0.46 +0.6 1,285,407 - HP15_1234 0.46 -0.7 1,285,468 + HP15_1234 0.69 +0.4 1,285,542 - +0.1 1,285,543 + -0.1 1,285,632 + HP15_1235 0.21 +0.9 1,285,694 - HP15_1235 0.39 +0.9 1,285,774 - HP15_1235 0.63 +2.0 1,285,845 + HP15_1235 0.83 +0.7 1,285,845 + HP15_1235 0.83 -0.2 1,285,850 + HP15_1235 0.85 -0.2 1,285,853 - HP15_1235 0.86 +1.3 1,285,853 - HP15_1235 0.86 -0.2 1,285,858 - HP15_1235 0.87 +1.0 1,285,940 + +0.7 1,285,994 + +0.2
Or see this region's nucleotide sequence