Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1231 and HP15_1232 are separated by 308 nucleotides HP15_1232 and HP15_1233 are separated by 29 nucleotides
HP15_1231: HP15_1231 - periplasmic tail-specific proteinase, at 1,279,276 to 1,281,399
_1231
HP15_1232: HP15_1232 - fatty acid oxidation complex subunit alpha, at 1,281,708 to 1,283,858
_1232
HP15_1233: HP15_1233 - acetyl-CoA acetyltransferase, at 1,283,888 to 1,285,096
_1233
Position (kb)
1281
1282
1283
1284 Strain fitness (log2 ratio)
-2
-1
0
1 at 1281.556 kb on + strand at 1281.569 kb on - strand at 1281.694 kb on + strand at 1281.699 kb on - strand at 1281.701 kb on + strand at 1281.748 kb on + strand at 1281.773 kb on - strand at 1281.780 kb on - strand at 1281.860 kb on + strand at 1281.907 kb on - strand at 1281.907 kb on - strand at 1281.931 kb on - strand, within HP15_1232 at 1282.036 kb on + strand, within HP15_1232 at 1282.090 kb on + strand, within HP15_1232 at 1282.090 kb on + strand, within HP15_1232 at 1282.098 kb on - strand, within HP15_1232 at 1282.193 kb on + strand, within HP15_1232 at 1282.372 kb on - strand, within HP15_1232 at 1282.433 kb on + strand, within HP15_1232 at 1282.558 kb on - strand, within HP15_1232 at 1282.635 kb on + strand, within HP15_1232 at 1282.645 kb on - strand, within HP15_1232 at 1282.670 kb on + strand, within HP15_1232 at 1282.670 kb on + strand, within HP15_1232 at 1282.678 kb on - strand, within HP15_1232 at 1282.678 kb on - strand, within HP15_1232 at 1282.713 kb on - strand, within HP15_1232 at 1282.756 kb on + strand, within HP15_1232 at 1282.756 kb on + strand, within HP15_1232 at 1282.866 kb on + strand, within HP15_1232 at 1282.881 kb on + strand, within HP15_1232 at 1283.187 kb on - strand, within HP15_1232 at 1283.204 kb on + strand, within HP15_1232 at 1283.205 kb on + strand, within HP15_1232 at 1283.213 kb on - strand, within HP15_1232 at 1283.267 kb on - strand, within HP15_1232 at 1283.325 kb on - strand, within HP15_1232 at 1283.397 kb on - strand, within HP15_1232 at 1283.458 kb on - strand, within HP15_1232 at 1283.646 kb on - strand at 1283.743 kb on + strand at 1283.822 kb on - strand at 1283.825 kb on + strand at 1283.825 kb on + strand at 1283.846 kb on + strand at 1283.886 kb on + strand at 1283.894 kb on - strand at 1283.894 kb on - strand at 1284.034 kb on + strand, within HP15_1233 at 1284.034 kb on - strand, within HP15_1233 at 1284.121 kb on - strand, within HP15_1233 at 1284.122 kb on - strand, within HP15_1233 at 1284.214 kb on + strand, within HP15_1233 at 1284.215 kb on - strand, within HP15_1233 at 1284.222 kb on - strand, within HP15_1233 at 1284.222 kb on - strand, within HP15_1233 at 1284.224 kb on + strand, within HP15_1233 at 1284.263 kb on + strand, within HP15_1233 at 1284.270 kb on + strand, within HP15_1233 at 1284.278 kb on - strand, within HP15_1233 at 1284.278 kb on - strand, within HP15_1233 at 1284.330 kb on - strand, within HP15_1233 at 1284.438 kb on - strand, within HP15_1233 at 1284.468 kb on + strand, within HP15_1233 at 1284.508 kb on + strand, within HP15_1233 at 1284.522 kb on + strand, within HP15_1233 at 1284.616 kb on + strand, within HP15_1233 at 1284.616 kb on - strand, within HP15_1233 at 1284.634 kb on + strand, within HP15_1233 at 1284.637 kb on - strand, within HP15_1233 at 1284.642 kb on - strand, within HP15_1233 at 1284.655 kb on - strand, within HP15_1233 at 1284.736 kb on + strand, within HP15_1233 at 1284.744 kb on - strand, within HP15_1233 at 1284.830 kb on + strand, within HP15_1233 at 1284.843 kb on - strand, within HP15_1233
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 1,281,556 + -0.1 1,281,569 - -0.1 1,281,694 + -0.1 1,281,699 - -0.2 1,281,701 + -0.3 1,281,748 + +0.6 1,281,773 - +0.5 1,281,780 - +0.2 1,281,860 + -1.0 1,281,907 - +0.9 1,281,907 - -0.5 1,281,931 - HP15_1232 0.10 +0.3 1,282,036 + HP15_1232 0.15 -0.3 1,282,090 + HP15_1232 0.18 +1.1 1,282,090 + HP15_1232 0.18 -0.8 1,282,098 - HP15_1232 0.18 +0.3 1,282,193 + HP15_1232 0.23 -0.3 1,282,372 - HP15_1232 0.31 -0.3 1,282,433 + HP15_1232 0.34 -0.4 1,282,558 - HP15_1232 0.40 -0.3 1,282,635 + HP15_1232 0.43 -0.4 1,282,645 - HP15_1232 0.44 +0.1 1,282,670 + HP15_1232 0.45 -0.3 1,282,670 + HP15_1232 0.45 -0.4 1,282,678 - HP15_1232 0.45 +0.1 1,282,678 - HP15_1232 0.45 -1.3 1,282,713 - HP15_1232 0.47 +0.8 1,282,756 + HP15_1232 0.49 -0.5 1,282,756 + HP15_1232 0.49 +1.1 1,282,866 + HP15_1232 0.54 -0.1 1,282,881 + HP15_1232 0.55 -0.9 1,283,187 - HP15_1232 0.69 -0.8 1,283,204 + HP15_1232 0.70 -0.3 1,283,205 + HP15_1232 0.70 -2.5 1,283,213 - HP15_1232 0.70 -0.7 1,283,267 - HP15_1232 0.72 +0.1 1,283,325 - HP15_1232 0.75 +0.5 1,283,397 - HP15_1232 0.79 -0.1 1,283,458 - HP15_1232 0.81 +0.1 1,283,646 - -0.0 1,283,743 + -0.3 1,283,822 - +0.9 1,283,825 + -1.3 1,283,825 + -0.5 1,283,846 + -0.5 1,283,886 + +0.6 1,283,894 - -0.3 1,283,894 - -1.5 1,284,034 + HP15_1233 0.12 -0.4 1,284,034 - HP15_1233 0.12 +0.3 1,284,121 - HP15_1233 0.19 +0.6 1,284,122 - HP15_1233 0.19 +1.1 1,284,214 + HP15_1233 0.27 +0.9 1,284,215 - HP15_1233 0.27 +0.7 1,284,222 - HP15_1233 0.28 -0.2 1,284,222 - HP15_1233 0.28 +0.4 1,284,224 + HP15_1233 0.28 -1.0 1,284,263 + HP15_1233 0.31 +0.5 1,284,270 + HP15_1233 0.32 -0.3 1,284,278 - HP15_1233 0.32 +0.4 1,284,278 - HP15_1233 0.32 -0.2 1,284,330 - HP15_1233 0.37 +1.1 1,284,438 - HP15_1233 0.45 +0.1 1,284,468 + HP15_1233 0.48 -0.6 1,284,508 + HP15_1233 0.51 -0.3 1,284,522 + HP15_1233 0.52 +0.7 1,284,616 + HP15_1233 0.60 +0.5 1,284,616 - HP15_1233 0.60 +0.8 1,284,634 + HP15_1233 0.62 +0.6 1,284,637 - HP15_1233 0.62 +0.7 1,284,642 - HP15_1233 0.62 +0.6 1,284,655 - HP15_1233 0.63 +0.3 1,284,736 + HP15_1233 0.70 +1.1 1,284,744 - HP15_1233 0.71 -0.5 1,284,830 + HP15_1233 0.78 +0.2 1,284,843 - HP15_1233 0.79 +1.2
Or see this region's nucleotide sequence