Strain Fitness in Marinobacter adhaerens HP15 around HP15_1232

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1231 and HP15_1232 are separated by 308 nucleotidesHP15_1232 and HP15_1233 are separated by 29 nucleotides HP15_1231: HP15_1231 - periplasmic tail-specific proteinase, at 1,279,276 to 1,281,399 _1231 HP15_1232: HP15_1232 - fatty acid oxidation complex subunit alpha, at 1,281,708 to 1,283,858 _1232 HP15_1233: HP15_1233 - acetyl-CoA acetyltransferase, at 1,283,888 to 1,285,096 _1233 Position (kb) 1281 1282 1283 1284Strain fitness (log2 ratio) -2 -1 0 1at 1281.556 kb on + strandat 1281.569 kb on - strandat 1281.694 kb on + strandat 1281.699 kb on - strandat 1281.701 kb on + strandat 1281.748 kb on + strandat 1281.773 kb on - strandat 1281.780 kb on - strandat 1281.860 kb on + strandat 1281.907 kb on - strandat 1281.907 kb on - strandat 1281.931 kb on - strand, within HP15_1232at 1282.036 kb on + strand, within HP15_1232at 1282.090 kb on + strand, within HP15_1232at 1282.090 kb on + strand, within HP15_1232at 1282.098 kb on - strand, within HP15_1232at 1282.193 kb on + strand, within HP15_1232at 1282.372 kb on - strand, within HP15_1232at 1282.433 kb on + strand, within HP15_1232at 1282.558 kb on - strand, within HP15_1232at 1282.635 kb on + strand, within HP15_1232at 1282.645 kb on - strand, within HP15_1232at 1282.670 kb on + strand, within HP15_1232at 1282.670 kb on + strand, within HP15_1232at 1282.678 kb on - strand, within HP15_1232at 1282.678 kb on - strand, within HP15_1232at 1282.713 kb on - strand, within HP15_1232at 1282.756 kb on + strand, within HP15_1232at 1282.756 kb on + strand, within HP15_1232at 1282.866 kb on + strand, within HP15_1232at 1282.881 kb on + strand, within HP15_1232at 1283.187 kb on - strand, within HP15_1232at 1283.204 kb on + strand, within HP15_1232at 1283.205 kb on + strand, within HP15_1232at 1283.213 kb on - strand, within HP15_1232at 1283.267 kb on - strand, within HP15_1232at 1283.325 kb on - strand, within HP15_1232at 1283.397 kb on - strand, within HP15_1232at 1283.458 kb on - strand, within HP15_1232at 1283.646 kb on - strandat 1283.743 kb on + strandat 1283.822 kb on - strandat 1283.825 kb on + strandat 1283.825 kb on + strandat 1283.846 kb on + strandat 1283.886 kb on + strandat 1283.894 kb on - strandat 1283.894 kb on - strandat 1284.034 kb on + strand, within HP15_1233at 1284.034 kb on - strand, within HP15_1233at 1284.121 kb on - strand, within HP15_1233at 1284.122 kb on - strand, within HP15_1233at 1284.214 kb on + strand, within HP15_1233at 1284.215 kb on - strand, within HP15_1233at 1284.222 kb on - strand, within HP15_1233at 1284.222 kb on - strand, within HP15_1233at 1284.224 kb on + strand, within HP15_1233at 1284.263 kb on + strand, within HP15_1233at 1284.270 kb on + strand, within HP15_1233at 1284.278 kb on - strand, within HP15_1233at 1284.278 kb on - strand, within HP15_1233at 1284.330 kb on - strand, within HP15_1233at 1284.438 kb on - strand, within HP15_1233at 1284.468 kb on + strand, within HP15_1233at 1284.508 kb on + strand, within HP15_1233at 1284.522 kb on + strand, within HP15_1233at 1284.616 kb on + strand, within HP15_1233at 1284.616 kb on - strand, within HP15_1233at 1284.634 kb on + strand, within HP15_1233at 1284.637 kb on - strand, within HP15_1233at 1284.642 kb on - strand, within HP15_1233at 1284.655 kb on - strand, within HP15_1233at 1284.736 kb on + strand, within HP15_1233at 1284.744 kb on - strand, within HP15_1233at 1284.830 kb on + strand, within HP15_1233at 1284.843 kb on - strand, within HP15_1233

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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1,281,556 + -0.1
1,281,569 - -0.1
1,281,694 + -0.1
1,281,699 - -0.2
1,281,701 + -0.3
1,281,748 + +0.6
1,281,773 - +0.5
1,281,780 - +0.2
1,281,860 + -1.0
1,281,907 - +0.9
1,281,907 - -0.5
1,281,931 - HP15_1232 0.10 +0.3
1,282,036 + HP15_1232 0.15 -0.3
1,282,090 + HP15_1232 0.18 +1.1
1,282,090 + HP15_1232 0.18 -0.8
1,282,098 - HP15_1232 0.18 +0.3
1,282,193 + HP15_1232 0.23 -0.3
1,282,372 - HP15_1232 0.31 -0.3
1,282,433 + HP15_1232 0.34 -0.4
1,282,558 - HP15_1232 0.40 -0.3
1,282,635 + HP15_1232 0.43 -0.4
1,282,645 - HP15_1232 0.44 +0.1
1,282,670 + HP15_1232 0.45 -0.3
1,282,670 + HP15_1232 0.45 -0.4
1,282,678 - HP15_1232 0.45 +0.1
1,282,678 - HP15_1232 0.45 -1.3
1,282,713 - HP15_1232 0.47 +0.8
1,282,756 + HP15_1232 0.49 -0.5
1,282,756 + HP15_1232 0.49 +1.1
1,282,866 + HP15_1232 0.54 -0.1
1,282,881 + HP15_1232 0.55 -0.9
1,283,187 - HP15_1232 0.69 -0.8
1,283,204 + HP15_1232 0.70 -0.3
1,283,205 + HP15_1232 0.70 -2.5
1,283,213 - HP15_1232 0.70 -0.7
1,283,267 - HP15_1232 0.72 +0.1
1,283,325 - HP15_1232 0.75 +0.5
1,283,397 - HP15_1232 0.79 -0.1
1,283,458 - HP15_1232 0.81 +0.1
1,283,646 - -0.0
1,283,743 + -0.3
1,283,822 - +0.9
1,283,825 + -1.3
1,283,825 + -0.5
1,283,846 + -0.5
1,283,886 + +0.6
1,283,894 - -0.3
1,283,894 - -1.5
1,284,034 + HP15_1233 0.12 -0.4
1,284,034 - HP15_1233 0.12 +0.3
1,284,121 - HP15_1233 0.19 +0.6
1,284,122 - HP15_1233 0.19 +1.1
1,284,214 + HP15_1233 0.27 +0.9
1,284,215 - HP15_1233 0.27 +0.7
1,284,222 - HP15_1233 0.28 -0.2
1,284,222 - HP15_1233 0.28 +0.4
1,284,224 + HP15_1233 0.28 -1.0
1,284,263 + HP15_1233 0.31 +0.5
1,284,270 + HP15_1233 0.32 -0.3
1,284,278 - HP15_1233 0.32 +0.4
1,284,278 - HP15_1233 0.32 -0.2
1,284,330 - HP15_1233 0.37 +1.1
1,284,438 - HP15_1233 0.45 +0.1
1,284,468 + HP15_1233 0.48 -0.6
1,284,508 + HP15_1233 0.51 -0.3
1,284,522 + HP15_1233 0.52 +0.7
1,284,616 + HP15_1233 0.60 +0.5
1,284,616 - HP15_1233 0.60 +0.8
1,284,634 + HP15_1233 0.62 +0.6
1,284,637 - HP15_1233 0.62 +0.7
1,284,642 - HP15_1233 0.62 +0.6
1,284,655 - HP15_1233 0.63 +0.3
1,284,736 + HP15_1233 0.70 +1.1
1,284,744 - HP15_1233 0.71 -0.5
1,284,830 + HP15_1233 0.78 +0.2
1,284,843 - HP15_1233 0.79 +1.2

Or see this region's nucleotide sequence