Experiment: Ethanol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1113 and HP15_1114 are separated by 26 nucleotides HP15_1114 and HP15_1115 are separated by 13 nucleotides HP15_1115 and HP15_1116 overlap by 4 nucleotides HP15_1116 and HP15_1117 are separated by 9 nucleotides
HP15_1113: HP15_1113 - hydratase/decarboxylase, at 1,140,309 to 1,141,094
_1113
HP15_1114: HP15_1114 - acetaldehyde dehydrogenase, at 1,141,121 to 1,142,056
_1114
HP15_1115: HP15_1115 - 4-hydroxy-2-ketovalerate aldolase, at 1,142,070 to 1,143,107
_1115
HP15_1116: HP15_1116 - hydratase/decarboxylase, at 1,143,104 to 1,143,898
_1116
HP15_1117: HP15_1117 - 4-oxalocrotonate tautomerase, at 1,143,908 to 1,144,099
_1117
Position (kb)
1142
1143
1144 Strain fitness (log2 ratio)
-2
-1
0
1 at 1141.167 kb on + strand at 1141.243 kb on - strand, within HP15_1114 at 1141.324 kb on + strand, within HP15_1114 at 1141.398 kb on + strand, within HP15_1114 at 1141.406 kb on - strand, within HP15_1114 at 1141.525 kb on + strand, within HP15_1114 at 1141.701 kb on - strand, within HP15_1114 at 1141.810 kb on + strand, within HP15_1114 at 1141.818 kb on - strand, within HP15_1114 at 1141.899 kb on + strand, within HP15_1114 at 1142.102 kb on - strand at 1142.150 kb on - strand at 1142.194 kb on - strand, within HP15_1115 at 1142.200 kb on - strand, within HP15_1115 at 1142.214 kb on - strand, within HP15_1115 at 1142.240 kb on - strand, within HP15_1115 at 1142.511 kb on + strand, within HP15_1115 at 1142.647 kb on - strand, within HP15_1115 at 1142.673 kb on + strand, within HP15_1115 at 1142.675 kb on + strand, within HP15_1115 at 1142.681 kb on - strand, within HP15_1115 at 1142.681 kb on - strand, within HP15_1115 at 1142.683 kb on - strand, within HP15_1115 at 1142.690 kb on + strand, within HP15_1115 at 1142.756 kb on + strand, within HP15_1115 at 1142.922 kb on - strand, within HP15_1115 at 1142.967 kb on - strand, within HP15_1115 at 1143.133 kb on - strand at 1143.263 kb on - strand, within HP15_1116 at 1143.321 kb on - strand, within HP15_1116 at 1143.323 kb on + strand, within HP15_1116 at 1143.394 kb on + strand, within HP15_1116 at 1143.398 kb on - strand, within HP15_1116 at 1143.407 kb on + strand, within HP15_1116 at 1143.448 kb on + strand, within HP15_1116 at 1143.463 kb on - strand, within HP15_1116 at 1143.486 kb on + strand, within HP15_1116 at 1143.490 kb on + strand, within HP15_1116 at 1143.522 kb on + strand, within HP15_1116 at 1143.654 kb on + strand, within HP15_1116 at 1143.662 kb on - strand, within HP15_1116 at 1143.686 kb on + strand, within HP15_1116 at 1143.718 kb on - strand, within HP15_1116 at 1143.721 kb on - strand, within HP15_1116 at 1143.728 kb on + strand, within HP15_1116 at 1143.729 kb on + strand, within HP15_1116 at 1143.784 kb on + strand, within HP15_1116 at 1143.865 kb on + strand at 1143.901 kb on - strand at 1144.093 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol remove 1,141,167 + +1.2 1,141,243 - HP15_1114 0.13 -0.6 1,141,324 + HP15_1114 0.22 -2.0 1,141,398 + HP15_1114 0.30 -0.2 1,141,406 - HP15_1114 0.30 +0.1 1,141,525 + HP15_1114 0.43 -0.3 1,141,701 - HP15_1114 0.62 -0.9 1,141,810 + HP15_1114 0.74 -0.2 1,141,818 - HP15_1114 0.74 +0.1 1,141,899 + HP15_1114 0.83 +1.7 1,142,102 - -1.6 1,142,150 - -0.6 1,142,194 - HP15_1115 0.12 -0.0 1,142,200 - HP15_1115 0.13 +0.8 1,142,214 - HP15_1115 0.14 +0.6 1,142,240 - HP15_1115 0.16 -0.4 1,142,511 + HP15_1115 0.42 +0.2 1,142,647 - HP15_1115 0.56 +0.1 1,142,673 + HP15_1115 0.58 +0.2 1,142,675 + HP15_1115 0.58 -0.2 1,142,681 - HP15_1115 0.59 -0.5 1,142,681 - HP15_1115 0.59 -1.4 1,142,683 - HP15_1115 0.59 +0.1 1,142,690 + HP15_1115 0.60 +0.5 1,142,756 + HP15_1115 0.66 +0.1 1,142,922 - HP15_1115 0.82 +0.4 1,142,967 - HP15_1115 0.86 +0.4 1,143,133 - -1.6 1,143,263 - HP15_1116 0.20 -0.0 1,143,321 - HP15_1116 0.27 -1.4 1,143,323 + HP15_1116 0.28 +0.4 1,143,394 + HP15_1116 0.36 -0.3 1,143,398 - HP15_1116 0.37 +0.7 1,143,407 + HP15_1116 0.38 -0.5 1,143,448 + HP15_1116 0.43 -0.4 1,143,463 - HP15_1116 0.45 -0.2 1,143,486 + HP15_1116 0.48 +0.4 1,143,490 + HP15_1116 0.49 -0.4 1,143,522 + HP15_1116 0.53 +0.8 1,143,654 + HP15_1116 0.69 +0.6 1,143,662 - HP15_1116 0.70 +0.9 1,143,686 + HP15_1116 0.73 +1.3 1,143,718 - HP15_1116 0.77 -0.6 1,143,721 - HP15_1116 0.78 -0.1 1,143,728 + HP15_1116 0.78 -0.2 1,143,729 + HP15_1116 0.79 +0.2 1,143,784 + HP15_1116 0.86 -0.2 1,143,865 + -0.1 1,143,901 - -0.3 1,144,093 + +0.1
Or see this region's nucleotide sequence