Strain Fitness in Marinobacter adhaerens HP15 around HP15_1115

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1113 and HP15_1114 are separated by 26 nucleotidesHP15_1114 and HP15_1115 are separated by 13 nucleotidesHP15_1115 and HP15_1116 overlap by 4 nucleotidesHP15_1116 and HP15_1117 are separated by 9 nucleotides HP15_1113: HP15_1113 - hydratase/decarboxylase, at 1,140,309 to 1,141,094 _1113 HP15_1114: HP15_1114 - acetaldehyde dehydrogenase, at 1,141,121 to 1,142,056 _1114 HP15_1115: HP15_1115 - 4-hydroxy-2-ketovalerate aldolase, at 1,142,070 to 1,143,107 _1115 HP15_1116: HP15_1116 - hydratase/decarboxylase, at 1,143,104 to 1,143,898 _1116 HP15_1117: HP15_1117 - 4-oxalocrotonate tautomerase, at 1,143,908 to 1,144,099 _1117 Position (kb) 1142 1143 1144Strain fitness (log2 ratio) -2 -1 0 1at 1141.167 kb on + strandat 1141.243 kb on - strand, within HP15_1114at 1141.324 kb on + strand, within HP15_1114at 1141.398 kb on + strand, within HP15_1114at 1141.406 kb on - strand, within HP15_1114at 1141.525 kb on + strand, within HP15_1114at 1141.701 kb on - strand, within HP15_1114at 1141.810 kb on + strand, within HP15_1114at 1141.818 kb on - strand, within HP15_1114at 1141.899 kb on + strand, within HP15_1114at 1142.102 kb on - strandat 1142.150 kb on - strandat 1142.194 kb on - strand, within HP15_1115at 1142.200 kb on - strand, within HP15_1115at 1142.214 kb on - strand, within HP15_1115at 1142.240 kb on - strand, within HP15_1115at 1142.511 kb on + strand, within HP15_1115at 1142.647 kb on - strand, within HP15_1115at 1142.673 kb on + strand, within HP15_1115at 1142.675 kb on + strand, within HP15_1115at 1142.681 kb on - strand, within HP15_1115at 1142.681 kb on - strand, within HP15_1115at 1142.683 kb on - strand, within HP15_1115at 1142.690 kb on + strand, within HP15_1115at 1142.756 kb on + strand, within HP15_1115at 1142.922 kb on - strand, within HP15_1115at 1142.967 kb on - strand, within HP15_1115at 1143.133 kb on - strandat 1143.263 kb on - strand, within HP15_1116at 1143.321 kb on - strand, within HP15_1116at 1143.323 kb on + strand, within HP15_1116at 1143.394 kb on + strand, within HP15_1116at 1143.398 kb on - strand, within HP15_1116at 1143.407 kb on + strand, within HP15_1116at 1143.448 kb on + strand, within HP15_1116at 1143.463 kb on - strand, within HP15_1116at 1143.486 kb on + strand, within HP15_1116at 1143.490 kb on + strand, within HP15_1116at 1143.522 kb on + strand, within HP15_1116at 1143.654 kb on + strand, within HP15_1116at 1143.662 kb on - strand, within HP15_1116at 1143.686 kb on + strand, within HP15_1116at 1143.718 kb on - strand, within HP15_1116at 1143.721 kb on - strand, within HP15_1116at 1143.728 kb on + strand, within HP15_1116at 1143.729 kb on + strand, within HP15_1116at 1143.784 kb on + strand, within HP15_1116at 1143.865 kb on + strandat 1143.901 kb on - strandat 1144.093 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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1,141,167 + +1.2
1,141,243 - HP15_1114 0.13 -0.6
1,141,324 + HP15_1114 0.22 -2.0
1,141,398 + HP15_1114 0.30 -0.2
1,141,406 - HP15_1114 0.30 +0.1
1,141,525 + HP15_1114 0.43 -0.3
1,141,701 - HP15_1114 0.62 -0.9
1,141,810 + HP15_1114 0.74 -0.2
1,141,818 - HP15_1114 0.74 +0.1
1,141,899 + HP15_1114 0.83 +1.7
1,142,102 - -1.6
1,142,150 - -0.6
1,142,194 - HP15_1115 0.12 -0.0
1,142,200 - HP15_1115 0.13 +0.8
1,142,214 - HP15_1115 0.14 +0.6
1,142,240 - HP15_1115 0.16 -0.4
1,142,511 + HP15_1115 0.42 +0.2
1,142,647 - HP15_1115 0.56 +0.1
1,142,673 + HP15_1115 0.58 +0.2
1,142,675 + HP15_1115 0.58 -0.2
1,142,681 - HP15_1115 0.59 -0.5
1,142,681 - HP15_1115 0.59 -1.4
1,142,683 - HP15_1115 0.59 +0.1
1,142,690 + HP15_1115 0.60 +0.5
1,142,756 + HP15_1115 0.66 +0.1
1,142,922 - HP15_1115 0.82 +0.4
1,142,967 - HP15_1115 0.86 +0.4
1,143,133 - -1.6
1,143,263 - HP15_1116 0.20 -0.0
1,143,321 - HP15_1116 0.27 -1.4
1,143,323 + HP15_1116 0.28 +0.4
1,143,394 + HP15_1116 0.36 -0.3
1,143,398 - HP15_1116 0.37 +0.7
1,143,407 + HP15_1116 0.38 -0.5
1,143,448 + HP15_1116 0.43 -0.4
1,143,463 - HP15_1116 0.45 -0.2
1,143,486 + HP15_1116 0.48 +0.4
1,143,490 + HP15_1116 0.49 -0.4
1,143,522 + HP15_1116 0.53 +0.8
1,143,654 + HP15_1116 0.69 +0.6
1,143,662 - HP15_1116 0.70 +0.9
1,143,686 + HP15_1116 0.73 +1.3
1,143,718 - HP15_1116 0.77 -0.6
1,143,721 - HP15_1116 0.78 -0.1
1,143,728 + HP15_1116 0.78 -0.2
1,143,729 + HP15_1116 0.79 +0.2
1,143,784 + HP15_1116 0.86 -0.2
1,143,865 + -0.1
1,143,901 - -0.3
1,144,093 + +0.1

Or see this region's nucleotide sequence