Strain Fitness in Marinobacter adhaerens HP15 around HP15_1061

Experiment: Ethanol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1059 and HP15_1060 are separated by 111 nucleotidesHP15_1060 and HP15_1061 overlap by 4 nucleotidesHP15_1061 and HP15_1062 are separated by 61 nucleotides HP15_1059: HP15_1059 - ATPase involved in DNA repair, at 1,083,283 to 1,084,482 _1059 HP15_1060: HP15_1060 - inorganic polyphosphate/ATP-NAD kinase, at 1,084,594 to 1,085,478 _1060 HP15_1061: HP15_1061 - diadenosine tetraphosphatase and related serine/threonine protein phosphatase, at 1,085,475 to 1,086,494 _1061 HP15_1062: HP15_1062 - rhomboid family protein, at 1,086,556 to 1,087,401 _1062 Position (kb) 1085 1086 1087Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1084.484 kb on - strandat 1085.544 kb on + strandat 1085.553 kb on - strandat 1085.596 kb on + strand, within HP15_1061at 1085.670 kb on + strand, within HP15_1061at 1085.670 kb on + strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.692 kb on + strand, within HP15_1061at 1085.742 kb on + strand, within HP15_1061at 1085.747 kb on + strand, within HP15_1061at 1085.808 kb on + strand, within HP15_1061at 1085.843 kb on + strand, within HP15_1061at 1085.885 kb on + strand, within HP15_1061at 1085.885 kb on + strand, within HP15_1061at 1085.893 kb on - strand, within HP15_1061at 1085.893 kb on - strand, within HP15_1061at 1085.939 kb on - strand, within HP15_1061at 1085.978 kb on + strand, within HP15_1061at 1086.083 kb on - strand, within HP15_1061at 1086.107 kb on - strand, within HP15_1061at 1086.146 kb on + strand, within HP15_1061at 1086.162 kb on + strand, within HP15_1061at 1086.162 kb on + strand, within HP15_1061at 1086.162 kb on + strand, within HP15_1061at 1086.170 kb on - strand, within HP15_1061at 1086.535 kb on + strandat 1086.574 kb on - strandat 1086.588 kb on - strandat 1086.610 kb on - strandat 1086.610 kb on - strandat 1086.739 kb on + strand, within HP15_1062at 1086.747 kb on - strand, within HP15_1062at 1086.820 kb on - strand, within HP15_1062at 1086.840 kb on - strand, within HP15_1062at 1086.974 kb on - strand, within HP15_1062at 1087.161 kb on + strand, within HP15_1062at 1087.277 kb on + strand, within HP15_1062at 1087.332 kb on + strandat 1087.446 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol
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1,084,484 - +0.0
1,085,544 + -3.8
1,085,553 - -4.3
1,085,596 + HP15_1061 0.12 -4.0
1,085,670 + HP15_1061 0.19 -5.1
1,085,670 + HP15_1061 0.19 -3.2
1,085,678 - HP15_1061 0.20 -0.6
1,085,678 - HP15_1061 0.20 -3.8
1,085,678 - HP15_1061 0.20 -3.9
1,085,678 - HP15_1061 0.20 -4.6
1,085,678 - HP15_1061 0.20 -3.2
1,085,678 - HP15_1061 0.20 -3.9
1,085,692 + HP15_1061 0.21 -3.0
1,085,742 + HP15_1061 0.26 -3.0
1,085,747 + HP15_1061 0.27 -4.1
1,085,808 + HP15_1061 0.33 -3.9
1,085,843 + HP15_1061 0.36 -4.2
1,085,885 + HP15_1061 0.40 -2.8
1,085,885 + HP15_1061 0.40 -5.6
1,085,893 - HP15_1061 0.41 -0.6
1,085,893 - HP15_1061 0.41 -4.2
1,085,939 - HP15_1061 0.45 -4.3
1,085,978 + HP15_1061 0.49 -4.8
1,086,083 - HP15_1061 0.60 -4.0
1,086,107 - HP15_1061 0.62 -3.6
1,086,146 + HP15_1061 0.66 -0.6
1,086,162 + HP15_1061 0.67 -4.4
1,086,162 + HP15_1061 0.67 -2.6
1,086,162 + HP15_1061 0.67 -3.5
1,086,170 - HP15_1061 0.68 -4.6
1,086,535 + +0.0
1,086,574 - +0.8
1,086,588 - -0.2
1,086,610 - -0.4
1,086,610 - -0.1
1,086,739 + HP15_1062 0.22 -0.8
1,086,747 - HP15_1062 0.23 -0.2
1,086,820 - HP15_1062 0.31 +1.0
1,086,840 - HP15_1062 0.34 +0.4
1,086,974 - HP15_1062 0.49 +0.1
1,087,161 + HP15_1062 0.72 -0.2
1,087,277 + HP15_1062 0.85 +0.7
1,087,332 + +0.4
1,087,446 + -2.3

Or see this region's nucleotide sequence