Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2511

Experiment: Ammonium chloride (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrpsO and DvMF_2510 are separated by 23 nucleotidesDvMF_2510 and DvMF_2511 are separated by 5 nucleotidesDvMF_2511 and DvMF_2512 are separated by 321 nucleotidesDvMF_2512 and infB are separated by 105 nucleotides DvMF_2509: rpsO - 30S ribosomal protein S15 (RefSeq), at 3,164,952 to 3,165,221 rpsO DvMF_2510: DvMF_2510 - tRNA pseudouridine synthase B (RefSeq), at 3,165,245 to 3,166,171 _2510 DvMF_2511: DvMF_2511 - phosphoesterase RecJ domain protein (RefSeq), at 3,166,177 to 3,167,169 _2511 DvMF_2512: DvMF_2512 - protein of unknown function DUF503 (RefSeq), at 3,167,491 to 3,167,799 _2512 DvMF_2513: infB - translation initiation factor IF-2 (RefSeq), at 3,167,905 to 3,171,144 infB Position (kb) 3166 3167 3168Strain fitness (log2 ratio) -1 0 1 2at 3165.830 kb on - strand, within DvMF_2510at 3165.902 kb on + strand, within DvMF_2510at 3166.175 kb on - strandat 3167.546 kb on + strand, within DvMF_2512

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
remove
3,165,830 - DvMF_2510 0.63 +1.4
3,165,902 + DvMF_2510 0.71 +2.1
3,166,175 - +0.1
3,167,546 + DvMF_2512 0.18 -0.1

Or see this region's nucleotide sequence