Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2502

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2501 and DvMF_2502 are separated by 193 nucleotidesDvMF_2502 and DvMF_2503 are separated by 301 nucleotides DvMF_2501: DvMF_2501 - cobalamin (vitamin B12) biosynthesis CbiG protein (RefSeq), at 3,153,826 to 3,155,109 _2501 DvMF_2502: DvMF_2502 - glutamate-1-semialdehyde aminotransferase (RefSeq), at 3,155,303 to 3,156,580 _2502 DvMF_2503: DvMF_2503 - putative transcriptional regulator, AsnC family (RefSeq), at 3,156,882 to 3,157,382 _2503 Position (kb) 3155 3156 3157Strain fitness (log2 ratio) -2 -1 0 1 2at 3154.381 kb on - strand, within DvMF_2501at 3155.105 kb on + strandat 3155.105 kb on + strandat 3155.113 kb on - strandat 3155.113 kb on - strandat 3155.113 kb on - strandat 3155.159 kb on + strandat 3155.211 kb on - strandat 3155.227 kb on + strandat 3157.460 kb on - strandat 3157.476 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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3,154,381 - DvMF_2501 0.43 -1.8
3,155,105 + +0.2
3,155,105 + +2.0
3,155,113 - +0.5
3,155,113 - +0.3
3,155,113 - +0.8
3,155,159 + +0.2
3,155,211 - +0.5
3,155,227 + +0.3
3,157,460 - +0.6
3,157,476 + +0.2

Or see this region's nucleotide sequence