Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1795

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1794 and DvMF_1795 are separated by 51 nucleotidesDvMF_1795 and DvMF_1796 are separated by 69 nucleotidesDvMF_1796 and DvMF_1797 are separated by 123 nucleotides DvMF_1794: DvMF_1794 - 3-isopropylmalate dehydrogenase (RefSeq), at 2,194,483 to 2,195,559 _1794 DvMF_1795: DvMF_1795 - hypothetical protein (RefSeq), at 2,195,611 to 2,195,760 _1795 DvMF_1796: DvMF_1796 - hypothetical protein (RefSeq), at 2,195,830 to 2,196,576 _1796 DvMF_1797: DvMF_1797 - molybdenum cofactor synthesis domain protein (RefSeq), at 2,196,700 to 2,198,667 _1797 Position (kb) 2195 2196Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2194.616 kb on - strand, within DvMF_1794at 2195.112 kb on + strand, within DvMF_1794at 2195.823 kb on + strandat 2195.898 kb on - strandat 2195.960 kb on - strand, within DvMF_1796at 2195.998 kb on + strand, within DvMF_1796at 2196.007 kb on + strand, within DvMF_1796at 2196.267 kb on + strand, within DvMF_1796at 2196.427 kb on + strand, within DvMF_1796at 2196.427 kb on - strand, within DvMF_1796

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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2,194,616 - DvMF_1794 0.12 -4.8
2,195,112 + DvMF_1794 0.58 -5.8
2,195,823 + +0.4
2,195,898 - +0.6
2,195,960 - DvMF_1796 0.17 +0.0
2,195,998 + DvMF_1796 0.22 +0.6
2,196,007 + DvMF_1796 0.24 +0.7
2,196,267 + DvMF_1796 0.59 +0.1
2,196,427 + DvMF_1796 0.80 +0.6
2,196,427 - DvMF_1796 0.80 +0.4

Or see this region's nucleotide sequence