Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1038 and DvMF_1039 are separated by 32 nucleotides DvMF_1039 and DvMF_1040 are separated by 455 nucleotides
DvMF_1038: DvMF_1038 - twitching motility protein (RefSeq), at 1,260,087 to 1,261,205
_1038
DvMF_1039: DvMF_1039 - Type II secretory pathway component ExeA (predicted ATPase)-like protein (RefSeq), at 1,261,238 to 1,263,280
_1039
DvMF_1040: DvMF_1040 - PhoH family protein (RefSeq), at 1,263,736 to 1,265,313
_1040
Position (kb)
1261
1262
1263
1264 Strain fitness (log2 ratio)
-1
0
1 at 1260.332 kb on - strand, within DvMF_1038 at 1260.549 kb on - strand, within DvMF_1038 at 1260.604 kb on + strand, within DvMF_1038 at 1260.663 kb on + strand, within DvMF_1038 at 1260.717 kb on - strand, within DvMF_1038 at 1260.784 kb on - strand, within DvMF_1038 at 1260.993 kb on - strand, within DvMF_1038 at 1261.044 kb on - strand, within DvMF_1038 at 1261.095 kb on + strand at 1261.511 kb on - strand, within DvMF_1039 at 1261.797 kb on + strand, within DvMF_1039 at 1261.830 kb on + strand, within DvMF_1039 at 1261.883 kb on + strand, within DvMF_1039 at 1261.955 kb on - strand, within DvMF_1039 at 1262.011 kb on + strand, within DvMF_1039 at 1262.222 kb on - strand, within DvMF_1039 at 1262.269 kb on - strand, within DvMF_1039 at 1262.274 kb on - strand, within DvMF_1039 at 1262.359 kb on + strand, within DvMF_1039 at 1262.407 kb on - strand, within DvMF_1039 at 1262.534 kb on + strand, within DvMF_1039 at 1262.632 kb on - strand, within DvMF_1039 at 1263.123 kb on - strand at 1263.415 kb on - strand at 1263.602 kb on + strand at 1264.221 kb on + strand, within DvMF_1040
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 1,260,332 - DvMF_1038 0.22 +0.4 1,260,549 - DvMF_1038 0.41 +0.8 1,260,604 + DvMF_1038 0.46 +0.3 1,260,663 + DvMF_1038 0.51 +0.5 1,260,717 - DvMF_1038 0.56 -0.5 1,260,784 - DvMF_1038 0.62 +0.2 1,260,993 - DvMF_1038 0.81 +0.8 1,261,044 - DvMF_1038 0.86 +0.4 1,261,095 + +0.3 1,261,511 - DvMF_1039 0.13 -0.2 1,261,797 + DvMF_1039 0.27 +0.1 1,261,830 + DvMF_1039 0.29 +0.6 1,261,883 + DvMF_1039 0.32 +0.5 1,261,955 - DvMF_1039 0.35 +0.4 1,262,011 + DvMF_1039 0.38 +0.8 1,262,222 - DvMF_1039 0.48 +0.4 1,262,269 - DvMF_1039 0.50 +0.6 1,262,274 - DvMF_1039 0.51 -0.2 1,262,359 + DvMF_1039 0.55 +0.5 1,262,407 - DvMF_1039 0.57 +0.4 1,262,534 + DvMF_1039 0.63 +0.5 1,262,632 - DvMF_1039 0.68 +0.4 1,263,123 - -0.1 1,263,415 - +0.6 1,263,602 + +0.2 1,264,221 + DvMF_1040 0.31 +0.4
Or see this region's nucleotide sequence