Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1037

Experiment: Ammonium chloride (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1035 and DvMF_1036 are separated by 131 nucleotidesDvMF_1036 and DvMF_1037 are separated by 183 nucleotidesDvMF_1037 and DvMF_1038 are separated by 325 nucleotides DvMF_1035: DvMF_1035 - hypothetical protein (RefSeq), at 1,257,393 to 1,258,034 _1035 DvMF_1036: DvMF_1036 - Lytic transglycosylase catalytic (RefSeq), at 1,258,166 to 1,258,774 _1036 DvMF_1037: DvMF_1037 - peptidase A24A domain protein (RefSeq), at 1,258,958 to 1,259,761 _1037 DvMF_1038: DvMF_1038 - twitching motility protein (RefSeq), at 1,260,087 to 1,261,205 _1038 Position (kb) 1258 1259 1260Strain fitness (log2 ratio) -1 0 1at 1258.023 kb on - strandat 1258.445 kb on - strand, within DvMF_1036at 1258.581 kb on - strand, within DvMF_1036at 1259.187 kb on - strand, within DvMF_1037at 1259.306 kb on + strand, within DvMF_1037at 1259.429 kb on + strand, within DvMF_1037at 1259.655 kb on + strand, within DvMF_1037at 1259.712 kb on - strandat 1259.758 kb on - strandat 1259.873 kb on - strandat 1260.332 kb on - strand, within DvMF_1038at 1260.549 kb on - strand, within DvMF_1038at 1260.604 kb on + strand, within DvMF_1038at 1260.663 kb on + strand, within DvMF_1038at 1260.717 kb on - strand, within DvMF_1038

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
remove
1,258,023 - +0.6
1,258,445 - DvMF_1036 0.46 +0.5
1,258,581 - DvMF_1036 0.68 +0.7
1,259,187 - DvMF_1037 0.28 +0.2
1,259,306 + DvMF_1037 0.43 +0.9
1,259,429 + DvMF_1037 0.59 +0.5
1,259,655 + DvMF_1037 0.87 +0.0
1,259,712 - +0.2
1,259,758 - +0.3
1,259,873 - +1.0
1,260,332 - DvMF_1038 0.22 +0.4
1,260,549 - DvMF_1038 0.41 +0.8
1,260,604 + DvMF_1038 0.46 +0.3
1,260,663 + DvMF_1038 0.51 +0.5
1,260,717 - DvMF_1038 0.56 -0.5

Or see this region's nucleotide sequence