Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0909 and DvMF_0910 are separated by 290 nucleotides DvMF_0910 and DvMF_0911 are separated by 224 nucleotides DvMF_0911 and DvMF_0912 are separated by 109 nucleotides
DvMF_0909: DvMF_0909 - cytidylate kinase (RefSeq), at 1,093,747 to 1,094,406
_0909
DvMF_0910: DvMF_0910 - uracil-xanthine permease (RefSeq), at 1,094,697 to 1,095,983
_0910
DvMF_0911: DvMF_0911 - uracil phosphoribosyltransferase (RefSeq), at 1,096,208 to 1,096,834
_0911
DvMF_0912: DvMF_0912 - pseudouridine synthase, RluA family (RefSeq), at 1,096,944 to 1,098,620
_0912
Position (kb)
1094
1095
1096 Strain fitness (log2 ratio)
-1
0
1
2 at 1093.928 kb on + strand, within DvMF_0909 at 1094.251 kb on + strand, within DvMF_0909 at 1094.272 kb on + strand, within DvMF_0909 at 1094.784 kb on + strand at 1094.791 kb on + strand at 1095.247 kb on - strand, within DvMF_0910 at 1095.311 kb on + strand, within DvMF_0910 at 1095.387 kb on + strand, within DvMF_0910 at 1095.395 kb on - strand, within DvMF_0910 at 1095.435 kb on + strand, within DvMF_0910 at 1095.443 kb on - strand, within DvMF_0910 at 1095.443 kb on - strand, within DvMF_0910 at 1095.475 kb on - strand, within DvMF_0910 at 1095.572 kb on + strand, within DvMF_0910 at 1095.600 kb on + strand, within DvMF_0910 at 1095.720 kb on + strand, within DvMF_0910 at 1095.777 kb on + strand, within DvMF_0910 at 1095.814 kb on - strand, within DvMF_0910 at 1096.368 kb on + strand, within DvMF_0911 at 1096.507 kb on + strand, within DvMF_0911 at 1096.507 kb on + strand, within DvMF_0911 at 1096.507 kb on + strand, within DvMF_0911 at 1096.515 kb on - strand, within DvMF_0911 at 1096.515 kb on - strand, within DvMF_0911 at 1096.594 kb on + strand, within DvMF_0911 at 1096.615 kb on - strand, within DvMF_0911 at 1096.797 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 1,093,928 + DvMF_0909 0.27 +0.5 1,094,251 + DvMF_0909 0.76 +0.8 1,094,272 + DvMF_0909 0.80 +0.5 1,094,784 + -0.2 1,094,791 + -0.6 1,095,247 - DvMF_0910 0.43 -0.0 1,095,311 + DvMF_0910 0.48 +0.7 1,095,387 + DvMF_0910 0.54 +0.7 1,095,395 - DvMF_0910 0.54 +0.5 1,095,435 + DvMF_0910 0.57 +0.5 1,095,443 - DvMF_0910 0.58 +0.3 1,095,443 - DvMF_0910 0.58 +0.6 1,095,475 - DvMF_0910 0.60 +0.5 1,095,572 + DvMF_0910 0.68 -0.3 1,095,600 + DvMF_0910 0.70 -0.4 1,095,720 + DvMF_0910 0.79 +0.3 1,095,777 + DvMF_0910 0.84 -1.0 1,095,814 - DvMF_0910 0.87 -0.0 1,096,368 + DvMF_0911 0.26 +0.1 1,096,507 + DvMF_0911 0.48 +1.8 1,096,507 + DvMF_0911 0.48 +0.7 1,096,507 + DvMF_0911 0.48 +0.5 1,096,515 - DvMF_0911 0.49 +0.4 1,096,515 - DvMF_0911 0.49 -0.0 1,096,594 + DvMF_0911 0.62 +0.2 1,096,615 - DvMF_0911 0.65 +1.5 1,096,797 + +0.4
Or see this region's nucleotide sequence