Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0794 and DvMF_0795 are separated by 292 nucleotides DvMF_0795 and DvMF_0796 are separated by 299 nucleotides
DvMF_0794: DvMF_0794 - transcriptional regulator, XRE family (RefSeq), at 958,343 to 958,648
_0794
DvMF_0795: DvMF_0795 - Calcium-binding EF-hand-containing protein (RefSeq), at 958,941 to 960,131
_0795
DvMF_0796: DvMF_0796 - Calcium-binding EF-hand-containing protein (RefSeq), at 960,431 to 961,423
_0796
Position (kb) 958
959
960
961 Strain fitness (log2 ratio) -1
0
1 at 957.987 kb on - strand at 958.487 kb on - strand, within DvMF_0794 at 958.542 kb on - strand, within DvMF_0794 at 958.686 kb on + strand at 958.694 kb on - strand at 958.705 kb on + strand at 958.841 kb on - strand at 958.906 kb on - strand at 958.910 kb on + strand at 959.033 kb on + strand at 959.206 kb on - strand, within DvMF_0795 at 959.329 kb on - strand, within DvMF_0795 at 959.417 kb on + strand, within DvMF_0795 at 959.519 kb on - strand, within DvMF_0795 at 959.740 kb on - strand, within DvMF_0795 at 959.827 kb on + strand, within DvMF_0795 at 959.866 kb on - strand, within DvMF_0795 at 959.948 kb on - strand, within DvMF_0795 at 960.411 kb on + strand at 960.749 kb on + strand, within DvMF_0796 at 960.986 kb on - strand, within DvMF_0796 at 960.996 kb on - strand, within DvMF_0796
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 957,987 - -0.8 958,487 - DvMF_0794 0.47 +1.2 958,542 - DvMF_0794 0.65 +1.2 958,686 + +1.3 958,694 - +0.7 958,705 + +0.9 958,841 - +0.2 958,906 - -0.1 958,910 + +0.6 959,033 + +0.6 959,206 - DvMF_0795 0.22 +0.5 959,329 - DvMF_0795 0.33 +0.3 959,417 + DvMF_0795 0.40 +0.1 959,519 - DvMF_0795 0.49 +0.7 959,740 - DvMF_0795 0.67 +1.1 959,827 + DvMF_0795 0.74 +0.4 959,866 - DvMF_0795 0.78 +1.0 959,948 - DvMF_0795 0.85 +0.7 960,411 + -0.1 960,749 + DvMF_0796 0.32 +0.4 960,986 - DvMF_0796 0.56 -1.1 960,996 - DvMF_0796 0.57 +0.5
Or see this region's nucleotide sequence