Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0275 and DvMF_0276 are separated by 9 nucleotides DvMF_0276 and DvMF_0277 are separated by 70 nucleotides DvMF_0277 and DvMF_0278 are separated by 11 nucleotides
DvMF_0275: DvMF_0275 - putative alpha-isopropylmalate/homocitrate synthase family transferase (RefSeq), at 314,929 to 316,551
_0275
DvMF_0276: DvMF_0276 - aspartate kinase (RefSeq), at 316,561 to 317,790
_0276
DvMF_0277: DvMF_0277 - protein of unknown function UPF0079 (RefSeq), at 317,861 to 318,538
_0277
DvMF_0278: DvMF_0278 - CBS domain containing membrane protein (RefSeq), at 318,550 to 319,002
_0278
Position (kb) 316
317
318 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 315.637 kb on + strand, within DvMF_0275 at 315.731 kb on + strand, within DvMF_0275 at 315.739 kb on - strand, within DvMF_0275 at 315.766 kb on + strand, within DvMF_0275 at 315.774 kb on - strand, within DvMF_0275 at 315.774 kb on - strand, within DvMF_0275 at 315.877 kb on + strand, within DvMF_0275 at 315.885 kb on - strand, within DvMF_0275 at 315.902 kb on + strand, within DvMF_0275 at 315.929 kb on + strand, within DvMF_0275 at 316.111 kb on - strand, within DvMF_0275 at 316.334 kb on + strand, within DvMF_0275 at 317.061 kb on + strand, within DvMF_0276 at 317.830 kb on + strand at 317.838 kb on - strand at 317.994 kb on + strand, within DvMF_0277 at 318.631 kb on - strand, within DvMF_0278 at 318.715 kb on - strand, within DvMF_0278
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 315,637 + DvMF_0275 0.44 -2.0 315,731 + DvMF_0275 0.49 -3.6 315,739 - DvMF_0275 0.50 -3.1 315,766 + DvMF_0275 0.52 -1.9 315,774 - DvMF_0275 0.52 -3.3 315,774 - DvMF_0275 0.52 -3.3 315,877 + DvMF_0275 0.58 -3.4 315,885 - DvMF_0275 0.59 -4.2 315,902 + DvMF_0275 0.60 -3.8 315,929 + DvMF_0275 0.62 -3.1 316,111 - DvMF_0275 0.73 -2.9 316,334 + DvMF_0275 0.87 -2.2 317,061 + DvMF_0276 0.41 -3.0 317,830 + +0.6 317,838 - +0.5 317,994 + DvMF_0277 0.20 +0.3 318,631 - DvMF_0278 0.18 +0.5 318,715 - DvMF_0278 0.36 +2.4
Or see this region's nucleotide sequence