Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0262

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0261 and DvMF_0262 are separated by 501 nucleotidesDvMF_0262 and DvMF_0263 are separated by 33 nucleotides DvMF_0261: DvMF_0261 - putative chemotaxis phosphatase, CheZ (RefSeq), at 299,020 to 299,766 _0261 DvMF_0262: DvMF_0262 - Homocysteine formation from aspartate semialdehyde (NIL/ferredoxin component) (from data), at 300,268 to 300,711 _0262 DvMF_0263: DvMF_0263 - tol-pal system protein YbgF (RefSeq), at 300,745 to 301,746 _0263 Position (kb) 300 301Strain fitness (log2 ratio) -3 -2 -1 0 1at 299.311 kb on + strand, within DvMF_0261at 299.406 kb on + strand, within DvMF_0261at 299.518 kb on - strand, within DvMF_0261at 299.770 kb on - strandat 299.938 kb on + strandat 299.938 kb on + strandat 299.983 kb on - strandat 300.141 kb on - strandat 300.256 kb on - strandat 300.311 kb on + strandat 300.328 kb on - strand, within DvMF_0262at 300.521 kb on - strand, within DvMF_0262at 300.606 kb on + strand, within DvMF_0262at 300.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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299,311 + DvMF_0261 0.39 -0.2
299,406 + DvMF_0261 0.52 +0.6
299,518 - DvMF_0261 0.67 +0.1
299,770 - +0.5
299,938 + +0.6
299,938 + +0.7
299,983 - +0.1
300,141 - +0.3
300,256 - +0.4
300,311 + -1.0
300,328 - DvMF_0262 0.14 -3.6
300,521 - DvMF_0262 0.57 -2.2
300,606 + DvMF_0262 0.76 -1.8
300,689 + -2.4

Or see this region's nucleotide sequence