Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0151

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0149 and DvMF_0150 are separated by 9 nucleotidesDvMF_0150 and DvMF_0151 overlap by 14 nucleotidesDvMF_0151 and DvMF_0152 are separated by 29 nucleotidesDvMF_0152 and DvMF_0153 are separated by 0 nucleotides DvMF_0149: DvMF_0149 - protein of unknown function YGGT (RefSeq), at 165,865 to 166,167 _0149 DvMF_0150: DvMF_0150 - DivIVA family protein (RefSeq), at 166,177 to 166,686 _0150 DvMF_0151: DvMF_0151 - protein of unknown function DUF167 (RefSeq), at 166,673 to 166,993 _0151 DvMF_0152: DvMF_0152 - hypothetical protein (RefSeq), at 167,023 to 167,253 _0152 DvMF_0153: DvMF_0153 - acetolactate synthase, large subunit, biosynthetic type (RefSeq), at 167,254 to 168,942 _0153 Position (kb) 166 167Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 165.743 kb on + strandat 165.743 kb on + strandat 165.743 kb on + strandat 166.078 kb on - strand, within DvMF_0149at 166.249 kb on - strand, within DvMF_0150at 166.452 kb on - strand, within DvMF_0150at 166.500 kb on + strand, within DvMF_0150at 166.630 kb on + strand, within DvMF_0150at 166.823 kb on + strand, within DvMF_0151at 167.247 kb on - strandat 167.302 kb on + strandat 167.442 kb on + strand, within DvMF_0153at 167.476 kb on - strand, within DvMF_0153

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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165,743 + +0.8
165,743 + +1.2
165,743 + +0.4
166,078 - DvMF_0149 0.70 +0.9
166,249 - DvMF_0150 0.14 +0.3
166,452 - DvMF_0150 0.54 +1.0
166,500 + DvMF_0150 0.63 +0.5
166,630 + DvMF_0150 0.89 +0.4
166,823 + DvMF_0151 0.47 +0.4
167,247 - -0.2
167,302 + -4.4
167,442 + DvMF_0153 0.11 -3.0
167,476 - DvMF_0153 0.13 -3.4

Or see this region's nucleotide sequence