Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0506 and Dshi_0507 are separated by 159 nucleotides Dshi_0507 and Dshi_0508 are separated by 183 nucleotides
Dshi_0506: Dshi_0506 - formate dehydrogenase, gamma subunit (RefSeq), at 490,899 to 491,927
_0506
Dshi_0507: Dshi_0507 - MRP-like protein (ATP/GTP-binding protein) (RefSeq), at 492,087 to 493,133
_0507
Dshi_0508: Dshi_0508 - cytochrome c class I (RefSeq), at 493,317 to 494,531
_0508
Position (kb) 492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 491.102 kb on + strand, within Dshi_0506 at 491.123 kb on + strand, within Dshi_0506 at 491.140 kb on - strand, within Dshi_0506 at 491.150 kb on + strand, within Dshi_0506 at 491.158 kb on - strand, within Dshi_0506 at 491.158 kb on - strand, within Dshi_0506 at 491.184 kb on - strand, within Dshi_0506 at 491.263 kb on + strand, within Dshi_0506 at 491.294 kb on - strand, within Dshi_0506 at 491.305 kb on + strand, within Dshi_0506 at 491.344 kb on + strand, within Dshi_0506 at 491.352 kb on - strand, within Dshi_0506 at 491.352 kb on - strand, within Dshi_0506 at 491.372 kb on + strand, within Dshi_0506 at 491.373 kb on + strand, within Dshi_0506 at 491.373 kb on + strand, within Dshi_0506 at 491.373 kb on + strand, within Dshi_0506 at 491.378 kb on + strand, within Dshi_0506 at 491.380 kb on - strand, within Dshi_0506 at 491.383 kb on + strand, within Dshi_0506 at 491.458 kb on + strand, within Dshi_0506 at 491.468 kb on + strand, within Dshi_0506 at 491.492 kb on - strand, within Dshi_0506 at 491.537 kb on - strand, within Dshi_0506 at 491.570 kb on - strand, within Dshi_0506 at 491.629 kb on + strand, within Dshi_0506 at 491.639 kb on + strand, within Dshi_0506 at 491.647 kb on - strand, within Dshi_0506 at 491.658 kb on - strand, within Dshi_0506 at 491.733 kb on + strand, within Dshi_0506 at 491.733 kb on + strand, within Dshi_0506 at 491.767 kb on - strand, within Dshi_0506 at 491.791 kb on + strand, within Dshi_0506 at 491.817 kb on + strand, within Dshi_0506 at 491.820 kb on + strand, within Dshi_0506 at 491.828 kb on - strand at 491.883 kb on + strand at 491.937 kb on - strand at 492.050 kb on + strand at 492.078 kb on + strand at 492.087 kb on - strand at 492.130 kb on + strand at 492.335 kb on + strand, within Dshi_0507 at 492.399 kb on + strand, within Dshi_0507 at 492.480 kb on - strand, within Dshi_0507 at 492.602 kb on + strand, within Dshi_0507 at 492.610 kb on - strand, within Dshi_0507 at 492.675 kb on - strand, within Dshi_0507 at 492.776 kb on - strand, within Dshi_0507 at 492.777 kb on - strand, within Dshi_0507 at 492.820 kb on - strand, within Dshi_0507 at 492.950 kb on + strand, within Dshi_0507 at 492.985 kb on - strand, within Dshi_0507 at 492.998 kb on + strand, within Dshi_0507 at 493.021 kb on + strand, within Dshi_0507 at 493.043 kb on + strand at 493.066 kb on - strand at 493.215 kb on - strand at 493.243 kb on - strand at 493.335 kb on - strand at 493.359 kb on + strand at 493.418 kb on + strand at 493.597 kb on + strand, within Dshi_0508 at 493.615 kb on - strand, within Dshi_0508 at 493.720 kb on + strand, within Dshi_0508 at 493.787 kb on - strand, within Dshi_0508 at 493.800 kb on + strand, within Dshi_0508 at 493.831 kb on + strand, within Dshi_0508 at 493.893 kb on + strand, within Dshi_0508 at 493.901 kb on - strand, within Dshi_0508 at 493.965 kb on + strand, within Dshi_0508 at 494.022 kb on + strand, within Dshi_0508 at 494.058 kb on - strand, within Dshi_0508 at 494.067 kb on - strand, within Dshi_0508 at 494.103 kb on - strand, within Dshi_0508
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 1.5 mM remove 491,102 + Dshi_0506 0.20 -0.4 491,123 + Dshi_0506 0.22 -0.6 491,140 - Dshi_0506 0.23 -0.9 491,150 + Dshi_0506 0.24 +0.6 491,158 - Dshi_0506 0.25 -0.2 491,158 - Dshi_0506 0.25 -1.1 491,184 - Dshi_0506 0.28 -0.1 491,263 + Dshi_0506 0.35 +0.0 491,294 - Dshi_0506 0.38 +0.2 491,305 + Dshi_0506 0.39 +0.0 491,344 + Dshi_0506 0.43 +0.4 491,352 - Dshi_0506 0.44 +1.9 491,352 - Dshi_0506 0.44 -0.6 491,372 + Dshi_0506 0.46 -0.1 491,373 + Dshi_0506 0.46 -0.3 491,373 + Dshi_0506 0.46 -0.3 491,373 + Dshi_0506 0.46 +0.3 491,378 + Dshi_0506 0.47 -0.3 491,380 - Dshi_0506 0.47 +1.5 491,383 + Dshi_0506 0.47 -0.4 491,458 + Dshi_0506 0.54 -0.6 491,468 + Dshi_0506 0.55 -0.6 491,492 - Dshi_0506 0.58 -0.2 491,537 - Dshi_0506 0.62 +0.4 491,570 - Dshi_0506 0.65 -0.9 491,629 + Dshi_0506 0.71 +0.4 491,639 + Dshi_0506 0.72 -0.8 491,647 - Dshi_0506 0.73 +0.2 491,658 - Dshi_0506 0.74 -1.3 491,733 + Dshi_0506 0.81 -0.5 491,733 + Dshi_0506 0.81 +0.4 491,767 - Dshi_0506 0.84 -0.6 491,791 + Dshi_0506 0.87 -0.6 491,817 + Dshi_0506 0.89 -1.4 491,820 + Dshi_0506 0.90 +0.6 491,828 - -0.4 491,883 + -0.5 491,937 - +0.0 492,050 + -0.1 492,078 + +0.2 492,087 - -0.5 492,130 + +0.3 492,335 + Dshi_0507 0.24 +0.5 492,399 + Dshi_0507 0.30 -1.0 492,480 - Dshi_0507 0.38 +0.1 492,602 + Dshi_0507 0.49 -0.3 492,610 - Dshi_0507 0.50 -0.1 492,675 - Dshi_0507 0.56 -0.5 492,776 - Dshi_0507 0.66 -1.0 492,777 - Dshi_0507 0.66 -0.4 492,820 - Dshi_0507 0.70 -0.0 492,950 + Dshi_0507 0.82 -0.2 492,985 - Dshi_0507 0.86 -0.2 492,998 + Dshi_0507 0.87 -0.3 493,021 + Dshi_0507 0.89 -1.4 493,043 + -0.2 493,066 - -0.8 493,215 - -0.8 493,243 - +1.7 493,335 - +0.2 493,359 + +0.4 493,418 + -1.0 493,597 + Dshi_0508 0.23 -2.4 493,615 - Dshi_0508 0.25 +0.5 493,720 + Dshi_0508 0.33 +0.3 493,787 - Dshi_0508 0.39 -0.4 493,800 + Dshi_0508 0.40 +0.6 493,831 + Dshi_0508 0.42 -0.1 493,893 + Dshi_0508 0.47 -0.3 493,901 - Dshi_0508 0.48 -0.1 493,965 + Dshi_0508 0.53 -0.0 494,022 + Dshi_0508 0.58 +0.8 494,058 - Dshi_0508 0.61 -0.2 494,067 - Dshi_0508 0.62 -0.5 494,103 - Dshi_0508 0.65 +1.0
Or see this region's nucleotide sequence