Experiment: m.b. 1-ethyl-3-methylimidazolium acetate 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0090 and Dshi_0091 are separated by 7 nucleotides Dshi_0091 and Dshi_0092 are separated by 1 nucleotides Dshi_0092 and Dshi_0093 are separated by 291 nucleotides
Dshi_0090: Dshi_0090 - peptidase M23B (RefSeq), at 88,672 to 89,775
_0090
Dshi_0091: Dshi_0091 - carboxyl-terminal protease (RefSeq), at 89,783 to 91,120
_0091
Dshi_0092: Dshi_0092 - NUDIX hydrolase (RefSeq), at 91,122 to 91,604
_0092
Dshi_0093: Dshi_0093 - hypothetical protein (RefSeq), at 91,896 to 92,264
_0093
Position (kb) 89
90
91
92 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 88.833 kb on - strand, within Dshi_0090 at 88.859 kb on + strand, within Dshi_0090 at 88.872 kb on + strand, within Dshi_0090 at 88.916 kb on + strand, within Dshi_0090 at 88.924 kb on - strand, within Dshi_0090 at 89.036 kb on + strand, within Dshi_0090 at 89.257 kb on - strand, within Dshi_0090 at 89.369 kb on - strand, within Dshi_0090 at 89.376 kb on - strand, within Dshi_0090 at 89.376 kb on - strand, within Dshi_0090 at 89.526 kb on - strand, within Dshi_0090 at 89.526 kb on - strand, within Dshi_0090 at 89.583 kb on + strand, within Dshi_0090 at 89.586 kb on + strand, within Dshi_0090 at 89.605 kb on - strand, within Dshi_0090 at 89.643 kb on + strand, within Dshi_0090 at 89.643 kb on + strand, within Dshi_0090 at 89.651 kb on - strand, within Dshi_0090 at 89.708 kb on + strand at 89.726 kb on + strand at 89.754 kb on + strand at 89.772 kb on - strand at 89.901 kb on + strand at 89.901 kb on + strand at 89.909 kb on - strand at 89.930 kb on - strand, within Dshi_0091 at 89.999 kb on - strand, within Dshi_0091 at 90.230 kb on - strand, within Dshi_0091 at 90.244 kb on + strand, within Dshi_0091 at 90.293 kb on + strand, within Dshi_0091 at 90.341 kb on - strand, within Dshi_0091 at 90.412 kb on - strand, within Dshi_0091 at 90.607 kb on + strand, within Dshi_0091 at 90.615 kb on - strand, within Dshi_0091 at 90.768 kb on + strand, within Dshi_0091 at 90.901 kb on + strand, within Dshi_0091 at 90.958 kb on - strand, within Dshi_0091 at 91.084 kb on + strand at 91.091 kb on - strand at 91.124 kb on - strand at 91.188 kb on - strand, within Dshi_0092 at 91.191 kb on + strand, within Dshi_0092 at 91.263 kb on - strand, within Dshi_0092 at 91.331 kb on + strand, within Dshi_0092 at 91.350 kb on + strand, within Dshi_0092 at 91.397 kb on + strand, within Dshi_0092 at 91.399 kb on + strand, within Dshi_0092 at 91.405 kb on - strand, within Dshi_0092 at 91.415 kb on - strand, within Dshi_0092 at 91.433 kb on - strand, within Dshi_0092 at 91.538 kb on - strand, within Dshi_0092 at 91.644 kb on + strand at 91.652 kb on - strand at 91.687 kb on - strand at 91.743 kb on - strand at 91.743 kb on - strand at 91.755 kb on - strand at 91.767 kb on + strand at 91.863 kb on - strand at 91.883 kb on + strand at 91.883 kb on + strand at 91.891 kb on - strand at 91.894 kb on + strand at 91.894 kb on + strand at 91.899 kb on + strand at 91.902 kb on - strand at 91.902 kb on - strand at 91.955 kb on - strand, within Dshi_0093 at 91.967 kb on - strand, within Dshi_0093 at 92.009 kb on - strand, within Dshi_0093
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium acetate 1.5 mM remove 88,833 - Dshi_0090 0.15 -0.4 88,859 + Dshi_0090 0.17 -0.6 88,872 + Dshi_0090 0.18 -0.9 88,916 + Dshi_0090 0.22 +0.2 88,924 - Dshi_0090 0.23 -0.5 89,036 + Dshi_0090 0.33 -1.0 89,257 - Dshi_0090 0.53 -0.1 89,369 - Dshi_0090 0.63 -0.0 89,376 - Dshi_0090 0.64 -1.1 89,376 - Dshi_0090 0.64 +1.6 89,526 - Dshi_0090 0.77 +0.2 89,526 - Dshi_0090 0.77 -0.2 89,583 + Dshi_0090 0.83 +0.1 89,586 + Dshi_0090 0.83 +0.1 89,605 - Dshi_0090 0.85 -1.8 89,643 + Dshi_0090 0.88 +0.2 89,643 + Dshi_0090 0.88 +0.8 89,651 - Dshi_0090 0.89 -1.5 89,708 + -1.5 89,726 + -0.3 89,754 + -0.2 89,772 - +0.1 89,901 + -1.6 89,901 + -1.9 89,909 - -1.0 89,930 - Dshi_0091 0.11 -0.4 89,999 - Dshi_0091 0.16 -0.0 90,230 - Dshi_0091 0.33 -3.9 90,244 + Dshi_0091 0.34 -2.0 90,293 + Dshi_0091 0.38 -1.0 90,341 - Dshi_0091 0.42 -2.2 90,412 - Dshi_0091 0.47 +0.6 90,607 + Dshi_0091 0.62 -0.0 90,615 - Dshi_0091 0.62 -1.8 90,768 + Dshi_0091 0.74 -2.4 90,901 + Dshi_0091 0.84 -2.8 90,958 - Dshi_0091 0.88 -3.0 91,084 + +0.7 91,091 - -0.8 91,124 - -0.4 91,188 - Dshi_0092 0.14 +0.3 91,191 + Dshi_0092 0.14 +0.0 91,263 - Dshi_0092 0.29 +0.1 91,331 + Dshi_0092 0.43 -1.2 91,350 + Dshi_0092 0.47 -0.4 91,397 + Dshi_0092 0.57 +0.4 91,399 + Dshi_0092 0.57 +0.6 91,405 - Dshi_0092 0.59 +0.6 91,415 - Dshi_0092 0.61 +0.6 91,433 - Dshi_0092 0.64 -0.8 91,538 - Dshi_0092 0.86 -0.0 91,644 + +0.6 91,652 - -0.0 91,687 - +0.1 91,743 - +0.4 91,743 - -0.0 91,755 - -0.6 91,767 + -0.0 91,863 - +0.3 91,883 + +0.3 91,883 + -0.1 91,891 - +0.8 91,894 + +0.4 91,894 + +1.1 91,899 + -0.7 91,902 - -0.6 91,902 - +0.2 91,955 - Dshi_0093 0.16 -0.4 91,967 - Dshi_0093 0.19 -0.2 92,009 - Dshi_0093 0.31 -0.0
Or see this region's nucleotide sequence