Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05296

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05295 and H281DRAFT_05296 are separated by 67 nucleotidesH281DRAFT_05296 and H281DRAFT_05297 are separated by 51 nucleotidesH281DRAFT_05297 and H281DRAFT_05298 are separated by 18 nucleotides H281DRAFT_05295: H281DRAFT_05295 - transcriptional regulator, GntR family, at 38,368 to 39,234 _05295 H281DRAFT_05296: H281DRAFT_05296 - GntR family transcriptional regulator, histidine utilization repressor, at 39,302 to 40,132 _05296 H281DRAFT_05297: H281DRAFT_05297 - amino acid ABC transporter ATP-binding protein, PAAT family, at 40,184 to 41,047 _05297 H281DRAFT_05298: H281DRAFT_05298 - amino acid ABC transporter membrane protein 2, PAAT family, at 41,066 to 41,728 _05298 Position (kb) 39 40 41Strain fitness (log2 ratio) -1 0 1at 38.379 kb on + strandat 38.649 kb on - strand, within H281DRAFT_05295at 38.950 kb on + strandat 39.028 kb on + strand, within H281DRAFT_05295at 39.073 kb on + strand, within H281DRAFT_05295at 39.094 kb on + strand, within H281DRAFT_05295at 39.154 kb on - strandat 39.322 kb on + strandat 39.322 kb on + strandat 39.368 kb on + strandat 39.600 kb on + strand, within H281DRAFT_05296at 39.988 kb on + strand, within H281DRAFT_05296at 39.988 kb on + strand, within H281DRAFT_05296at 40.785 kb on + strand, within H281DRAFT_05297at 40.896 kb on - strand, within H281DRAFT_05297

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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38,379 + -0.1
38,649 - H281DRAFT_05295 0.32 +0.2
38,950 + +0.3
39,028 + H281DRAFT_05295 0.76 -0.0
39,073 + H281DRAFT_05295 0.81 -0.6
39,094 + H281DRAFT_05295 0.84 +1.5
39,154 - +0.4
39,322 + -0.3
39,322 + +0.1
39,368 + +0.1
39,600 + H281DRAFT_05296 0.36 -0.2
39,988 + H281DRAFT_05296 0.83 +0.5
39,988 + H281DRAFT_05296 0.83 +1.1
40,785 + H281DRAFT_05297 0.70 -0.2
40,896 - H281DRAFT_05297 0.82 +0.2

Or see this region's nucleotide sequence