Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04728

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04726 and H281DRAFT_04727 are separated by 6 nucleotidesH281DRAFT_04727 and H281DRAFT_04728 are separated by 203 nucleotidesH281DRAFT_04728 and H281DRAFT_04729 overlap by 4 nucleotidesH281DRAFT_04729 and H281DRAFT_04730 overlap by 4 nucleotides H281DRAFT_04726: H281DRAFT_04726 - serine hydroxymethyltransferase, at 137,136 to 138,383 _04726 H281DRAFT_04727: H281DRAFT_04727 - transcriptional repressor NrdR, at 138,390 to 138,872 _04727 H281DRAFT_04728: H281DRAFT_04728 - type IV fimbrial biogenesis protein FimT, at 139,076 to 139,636 _04728 H281DRAFT_04729: H281DRAFT_04729 - Tfp pilus assembly protein PilV, at 139,633 to 140,091 _04729 H281DRAFT_04730: H281DRAFT_04730 - type IV pilus assembly protein PilW, at 140,088 to 140,900 _04730 Position (kb) 139 140Strain fitness (log2 ratio) -1 0 1at 138.510 kb on + strand, within H281DRAFT_04727at 138.511 kb on - strand, within H281DRAFT_04727at 138.511 kb on - strand, within H281DRAFT_04727at 138.511 kb on - strand, within H281DRAFT_04727at 138.725 kb on - strand, within H281DRAFT_04727at 138.759 kb on + strand, within H281DRAFT_04727at 138.902 kb on + strandat 138.903 kb on - strandat 138.983 kb on - strandat 139.039 kb on - strandat 139.039 kb on - strandat 139.117 kb on + strandat 139.118 kb on - strandat 139.237 kb on - strand, within H281DRAFT_04728at 139.294 kb on - strand, within H281DRAFT_04728at 139.380 kb on + strand, within H281DRAFT_04728at 139.405 kb on + strand, within H281DRAFT_04728at 139.406 kb on - strand, within H281DRAFT_04728at 139.558 kb on + strand, within H281DRAFT_04728at 139.559 kb on - strand, within H281DRAFT_04728at 140.120 kb on + strandat 140.121 kb on - strandat 140.138 kb on + strandat 140.139 kb on - strandat 140.187 kb on + strand, within H281DRAFT_04730at 140.190 kb on - strand, within H281DRAFT_04730at 140.408 kb on + strand, within H281DRAFT_04730at 140.408 kb on + strand, within H281DRAFT_04730at 140.433 kb on + strand, within H281DRAFT_04730at 140.511 kb on - strand, within H281DRAFT_04730

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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138,510 + H281DRAFT_04727 0.25 +0.3
138,511 - H281DRAFT_04727 0.25 -0.7
138,511 - H281DRAFT_04727 0.25 -0.7
138,511 - H281DRAFT_04727 0.25 -0.3
138,725 - H281DRAFT_04727 0.69 -0.6
138,759 + H281DRAFT_04727 0.76 -1.1
138,902 + -0.0
138,903 - -0.0
138,983 - -0.2
139,039 - +0.4
139,039 - -0.7
139,117 + -0.0
139,118 - -0.9
139,237 - H281DRAFT_04728 0.29 +1.1
139,294 - H281DRAFT_04728 0.39 -0.2
139,380 + H281DRAFT_04728 0.54 +0.2
139,405 + H281DRAFT_04728 0.59 -0.0
139,406 - H281DRAFT_04728 0.59 +1.4
139,558 + H281DRAFT_04728 0.86 +0.3
139,559 - H281DRAFT_04728 0.86 +0.4
140,120 + +0.3
140,121 - +1.0
140,138 + +0.9
140,139 - -0.7
140,187 + H281DRAFT_04730 0.12 +0.4
140,190 - H281DRAFT_04730 0.13 +0.5
140,408 + H281DRAFT_04730 0.39 +0.7
140,408 + H281DRAFT_04730 0.39 -0.3
140,433 + H281DRAFT_04730 0.42 +1.4
140,511 - H281DRAFT_04730 0.52 -0.0

Or see this region's nucleotide sequence