Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04726 and H281DRAFT_04727 are separated by 6 nucleotides H281DRAFT_04727 and H281DRAFT_04728 are separated by 203 nucleotides H281DRAFT_04728 and H281DRAFT_04729 overlap by 4 nucleotides H281DRAFT_04729 and H281DRAFT_04730 overlap by 4 nucleotides
H281DRAFT_04726: H281DRAFT_04726 - serine hydroxymethyltransferase, at 137,136 to 138,383
_04726
H281DRAFT_04727: H281DRAFT_04727 - transcriptional repressor NrdR, at 138,390 to 138,872
_04727
H281DRAFT_04728: H281DRAFT_04728 - type IV fimbrial biogenesis protein FimT, at 139,076 to 139,636
_04728
H281DRAFT_04729: H281DRAFT_04729 - Tfp pilus assembly protein PilV, at 139,633 to 140,091
_04729
H281DRAFT_04730: H281DRAFT_04730 - type IV pilus assembly protein PilW, at 140,088 to 140,900
_04730
Position (kb)
139
140 Strain fitness (log2 ratio)
-1
0
1 at 138.510 kb on + strand, within H281DRAFT_04727 at 138.511 kb on - strand, within H281DRAFT_04727 at 138.511 kb on - strand, within H281DRAFT_04727 at 138.511 kb on - strand, within H281DRAFT_04727 at 138.725 kb on - strand, within H281DRAFT_04727 at 138.759 kb on + strand, within H281DRAFT_04727 at 138.902 kb on + strand at 138.903 kb on - strand at 138.983 kb on - strand at 139.039 kb on - strand at 139.039 kb on - strand at 139.117 kb on + strand at 139.118 kb on - strand at 139.237 kb on - strand, within H281DRAFT_04728 at 139.294 kb on - strand, within H281DRAFT_04728 at 139.380 kb on + strand, within H281DRAFT_04728 at 139.405 kb on + strand, within H281DRAFT_04728 at 139.406 kb on - strand, within H281DRAFT_04728 at 139.558 kb on + strand, within H281DRAFT_04728 at 139.559 kb on - strand, within H281DRAFT_04728 at 140.120 kb on + strand at 140.121 kb on - strand at 140.138 kb on + strand at 140.139 kb on - strand at 140.187 kb on + strand, within H281DRAFT_04730 at 140.190 kb on - strand, within H281DRAFT_04730 at 140.408 kb on + strand, within H281DRAFT_04730 at 140.408 kb on + strand, within H281DRAFT_04730 at 140.433 kb on + strand, within H281DRAFT_04730 at 140.511 kb on - strand, within H281DRAFT_04730
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 138,510 + H281DRAFT_04727 0.25 +0.3 138,511 - H281DRAFT_04727 0.25 -0.7 138,511 - H281DRAFT_04727 0.25 -0.7 138,511 - H281DRAFT_04727 0.25 -0.3 138,725 - H281DRAFT_04727 0.69 -0.6 138,759 + H281DRAFT_04727 0.76 -1.1 138,902 + -0.0 138,903 - -0.0 138,983 - -0.2 139,039 - +0.4 139,039 - -0.7 139,117 + -0.0 139,118 - -0.9 139,237 - H281DRAFT_04728 0.29 +1.1 139,294 - H281DRAFT_04728 0.39 -0.2 139,380 + H281DRAFT_04728 0.54 +0.2 139,405 + H281DRAFT_04728 0.59 -0.0 139,406 - H281DRAFT_04728 0.59 +1.4 139,558 + H281DRAFT_04728 0.86 +0.3 139,559 - H281DRAFT_04728 0.86 +0.4 140,120 + +0.3 140,121 - +1.0 140,138 + +0.9 140,139 - -0.7 140,187 + H281DRAFT_04730 0.12 +0.4 140,190 - H281DRAFT_04730 0.13 +0.5 140,408 + H281DRAFT_04730 0.39 +0.7 140,408 + H281DRAFT_04730 0.39 -0.3 140,433 + H281DRAFT_04730 0.42 +1.4 140,511 - H281DRAFT_04730 0.52 -0.0
Or see this region's nucleotide sequence