Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04598

Experiment: L-Glutamic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04597 and H281DRAFT_04598 are separated by 124 nucleotidesH281DRAFT_04598 and H281DRAFT_04599 are separated by 57 nucleotidesH281DRAFT_04599 and H281DRAFT_04600 are separated by 50 nucleotides H281DRAFT_04597: H281DRAFT_04597 - 2-keto-4-methylthiobutyrate aminotransferase apoenzyme, at 329,072 to 330,244 _04597 H281DRAFT_04598: H281DRAFT_04598 - putative toxin-antitoxin system toxin component, PIN family, at 330,369 to 330,884 _04598 H281DRAFT_04599: H281DRAFT_04599 - hypothetical protein, at 330,942 to 331,724 _04599 H281DRAFT_04600: H281DRAFT_04600 - Murein tripeptide amidase MpaA, at 331,775 to 332,929 _04600 Position (kb) 330 331Strain fitness (log2 ratio) -1 0 1at 329.391 kb on + strand, within H281DRAFT_04597at 329.392 kb on - strand, within H281DRAFT_04597at 329.392 kb on - strand, within H281DRAFT_04597at 329.517 kb on + strand, within H281DRAFT_04597at 329.517 kb on + strand, within H281DRAFT_04597at 329.518 kb on - strand, within H281DRAFT_04597at 329.518 kb on - strand, within H281DRAFT_04597at 329.518 kb on - strand, within H281DRAFT_04597at 329.518 kb on - strand, within H281DRAFT_04597at 329.524 kb on + strand, within H281DRAFT_04597at 329.525 kb on - strand, within H281DRAFT_04597at 329.525 kb on - strand, within H281DRAFT_04597at 329.616 kb on + strand, within H281DRAFT_04597at 329.616 kb on + strand, within H281DRAFT_04597at 329.617 kb on - strand, within H281DRAFT_04597at 329.617 kb on - strand, within H281DRAFT_04597at 329.617 kb on - strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.619 kb on - strand, within H281DRAFT_04597at 329.619 kb on - strand, within H281DRAFT_04597at 329.619 kb on - strand, within H281DRAFT_04597at 329.843 kb on + strand, within H281DRAFT_04597at 329.843 kb on + strand, within H281DRAFT_04597at 329.844 kb on - strand, within H281DRAFT_04597at 329.844 kb on - strand, within H281DRAFT_04597at 329.847 kb on + strand, within H281DRAFT_04597at 329.847 kb on + strand, within H281DRAFT_04597at 329.848 kb on - strand, within H281DRAFT_04597at 329.848 kb on - strand, within H281DRAFT_04597at 329.848 kb on - strand, within H281DRAFT_04597at 329.856 kb on + strand, within H281DRAFT_04597at 329.856 kb on + strand, within H281DRAFT_04597at 329.877 kb on - strand, within H281DRAFT_04597at 329.877 kb on - strand, within H281DRAFT_04597at 330.244 kb on + strandat 330.311 kb on + strandat 330.312 kb on - strandat 330.312 kb on - strandat 330.318 kb on + strandat 330.319 kb on - strandat 330.370 kb on + strandat 330.371 kb on - strandat 330.371 kb on - strandat 330.715 kb on + strand, within H281DRAFT_04598at 330.715 kb on + strand, within H281DRAFT_04598at 330.716 kb on - strand, within H281DRAFT_04598at 330.889 kb on + strandat 330.890 kb on - strandat 330.890 kb on - strandat 330.941 kb on + strandat 330.942 kb on - strandat 330.942 kb on - strandat 330.947 kb on - strandat 331.321 kb on - strand, within H281DRAFT_04599at 331.337 kb on + strand, within H281DRAFT_04599at 331.338 kb on - strand, within H281DRAFT_04599at 331.369 kb on + strand, within H281DRAFT_04599at 331.369 kb on + strand, within H281DRAFT_04599at 331.370 kb on - strand, within H281DRAFT_04599at 331.370 kb on - strand, within H281DRAFT_04599at 331.370 kb on - strand, within H281DRAFT_04599at 331.370 kb on - strand, within H281DRAFT_04599at 331.370 kb on - strand, within H281DRAFT_04599at 331.370 kb on - strand, within H281DRAFT_04599at 331.370 kb on - strand, within H281DRAFT_04599at 331.371 kb on + strand, within H281DRAFT_04599at 331.371 kb on + strand, within H281DRAFT_04599at 331.372 kb on - strand, within H281DRAFT_04599at 331.372 kb on - strand, within H281DRAFT_04599at 331.372 kb on - strand, within H281DRAFT_04599at 331.433 kb on + strand, within H281DRAFT_04599at 331.549 kb on - strand, within H281DRAFT_04599at 331.659 kb on + strandat 331.696 kb on - strandat 331.699 kb on + strandat 331.699 kb on + strandat 331.757 kb on + strandat 331.757 kb on + strandat 331.757 kb on + strandat 331.758 kb on - strandat 331.758 kb on - strandat 331.758 kb on - strandat 331.758 kb on - strandat 331.758 kb on - strandat 331.783 kb on - strandat 331.789 kb on + strandat 331.789 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
remove
329,391 + H281DRAFT_04597 0.27 +0.1
329,392 - H281DRAFT_04597 0.27 -0.6
329,392 - H281DRAFT_04597 0.27 +0.8
329,517 + H281DRAFT_04597 0.38 -0.1
329,517 + H281DRAFT_04597 0.38 +1.1
329,518 - H281DRAFT_04597 0.38 +0.1
329,518 - H281DRAFT_04597 0.38 +0.3
329,518 - H281DRAFT_04597 0.38 +0.2
329,518 - H281DRAFT_04597 0.38 -0.1
329,524 + H281DRAFT_04597 0.39 +0.3
329,525 - H281DRAFT_04597 0.39 -0.3
329,525 - H281DRAFT_04597 0.39 +0.5
329,616 + H281DRAFT_04597 0.46 -0.8
329,616 + H281DRAFT_04597 0.46 +0.5
329,617 - H281DRAFT_04597 0.46 +0.2
329,617 - H281DRAFT_04597 0.46 -0.1
329,617 - H281DRAFT_04597 0.46 +0.3
329,618 + H281DRAFT_04597 0.47 +0.1
329,618 + H281DRAFT_04597 0.47 -0.2
329,618 + H281DRAFT_04597 0.47 -0.9
329,618 + H281DRAFT_04597 0.47 -0.2
329,618 + H281DRAFT_04597 0.47 -0.2
329,618 + H281DRAFT_04597 0.47 +0.8
329,618 + H281DRAFT_04597 0.47 -0.7
329,619 - H281DRAFT_04597 0.47 +0.2
329,619 - H281DRAFT_04597 0.47 -0.3
329,619 - H281DRAFT_04597 0.47 +0.4
329,843 + H281DRAFT_04597 0.66 -0.2
329,843 + H281DRAFT_04597 0.66 +0.1
329,844 - H281DRAFT_04597 0.66 -0.7
329,844 - H281DRAFT_04597 0.66 +0.4
329,847 + H281DRAFT_04597 0.66 +0.5
329,847 + H281DRAFT_04597 0.66 +0.2
329,848 - H281DRAFT_04597 0.66 +0.6
329,848 - H281DRAFT_04597 0.66 -0.6
329,848 - H281DRAFT_04597 0.66 -0.7
329,856 + H281DRAFT_04597 0.67 -0.7
329,856 + H281DRAFT_04597 0.67 -0.3
329,877 - H281DRAFT_04597 0.69 -0.5
329,877 - H281DRAFT_04597 0.69 -0.3
330,244 + +0.4
330,311 + +0.3
330,312 - +0.2
330,312 - +0.2
330,318 + -0.0
330,319 - +0.3
330,370 + -0.2
330,371 - -0.5
330,371 - -0.0
330,715 + H281DRAFT_04598 0.67 +0.7
330,715 + H281DRAFT_04598 0.67 +0.2
330,716 - H281DRAFT_04598 0.67 +0.5
330,889 + +0.1
330,890 - +1.0
330,890 - -0.3
330,941 + +1.0
330,942 - -0.2
330,942 - +0.9
330,947 - +1.4
331,321 - H281DRAFT_04599 0.48 +0.9
331,337 + H281DRAFT_04599 0.50 -1.0
331,338 - H281DRAFT_04599 0.51 +0.6
331,369 + H281DRAFT_04599 0.55 +0.6
331,369 + H281DRAFT_04599 0.55 +0.3
331,370 - H281DRAFT_04599 0.55 +0.4
331,370 - H281DRAFT_04599 0.55 +0.5
331,370 - H281DRAFT_04599 0.55 +0.5
331,370 - H281DRAFT_04599 0.55 -0.6
331,370 - H281DRAFT_04599 0.55 -0.2
331,370 - H281DRAFT_04599 0.55 +0.6
331,370 - H281DRAFT_04599 0.55 +0.2
331,371 + H281DRAFT_04599 0.55 +0.3
331,371 + H281DRAFT_04599 0.55 +0.1
331,372 - H281DRAFT_04599 0.55 -0.6
331,372 - H281DRAFT_04599 0.55 +0.4
331,372 - H281DRAFT_04599 0.55 -0.3
331,433 + H281DRAFT_04599 0.63 +0.4
331,549 - H281DRAFT_04599 0.78 +0.4
331,659 + +0.8
331,696 - +0.2
331,699 + +0.4
331,699 + +1.0
331,757 + +0.3
331,757 + +0.1
331,757 + -0.9
331,758 - +0.2
331,758 - +0.8
331,758 - -1.3
331,758 - -0.5
331,758 - -0.4
331,783 - -0.1
331,789 + -0.4
331,789 + -0.2

Or see this region's nucleotide sequence