Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03292

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03291 and H281DRAFT_03292 are separated by 124 nucleotidesH281DRAFT_03292 and H281DRAFT_03293 are separated by 158 nucleotidesH281DRAFT_03293 and H281DRAFT_03294 are separated by 130 nucleotides H281DRAFT_03291: H281DRAFT_03291 - phosphatidylserine decarboxylase, at 351,482 to 352,726 _03291 H281DRAFT_03292: H281DRAFT_03292 - Mn-containing catalase, at 352,851 to 353,726 _03292 H281DRAFT_03293: H281DRAFT_03293 - Ferritin-like metal-binding protein YciE, at 353,885 to 354,385 _03293 H281DRAFT_03294: H281DRAFT_03294 - Hemerythrin HHE cation binding domain-containing protein, at 354,516 to 355,028 _03294 Position (kb) 352 353 354Strain fitness (log2 ratio) -1 0 1at 351.896 kb on - strand, within H281DRAFT_03291at 352.225 kb on - strand, within H281DRAFT_03291at 352.376 kb on + strand, within H281DRAFT_03291at 352.376 kb on + strand, within H281DRAFT_03291at 352.752 kb on + strandat 353.097 kb on - strand, within H281DRAFT_03292at 353.939 kb on + strand, within H281DRAFT_03293at 353.940 kb on - strand, within H281DRAFT_03293at 354.147 kb on + strand, within H281DRAFT_03293

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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351,896 - H281DRAFT_03291 0.33 +0.3
352,225 - H281DRAFT_03291 0.60 -0.6
352,376 + H281DRAFT_03291 0.72 +0.3
352,376 + H281DRAFT_03291 0.72 +0.2
352,752 + +0.6
353,097 - H281DRAFT_03292 0.28 +0.6
353,939 + H281DRAFT_03293 0.11 +0.2
353,940 - H281DRAFT_03293 0.11 +0.9
354,147 + H281DRAFT_03293 0.52 +0.8

Or see this region's nucleotide sequence