Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02734

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02731 and H281DRAFT_02732 overlap by 4 nucleotidesH281DRAFT_02732 and H281DRAFT_02733 are separated by 129 nucleotidesH281DRAFT_02733 and H281DRAFT_02734 are separated by 32 nucleotidesH281DRAFT_02734 and H281DRAFT_02735 are separated by 149 nucleotides H281DRAFT_02731: H281DRAFT_02731 - hypothetical protein, at 317,493 to 317,912 _02731 H281DRAFT_02732: H281DRAFT_02732 - RNA polymerase sigma-70 factor, ECF subfamily, at 317,909 to 318,469 _02732 H281DRAFT_02733: H281DRAFT_02733 - hypothetical protein, at 318,599 to 318,700 _02733 H281DRAFT_02734: H281DRAFT_02734 - YXWGXW repeat-containing protein, at 318,733 to 319,053 _02734 H281DRAFT_02735: H281DRAFT_02735 - AraC family transcriptional regulator, activator of mtrCDE, at 319,203 to 320,165 _02735 Position (kb) 318 319 320Strain fitness (log2 ratio) -1 0 1at 318.049 kb on - strand, within H281DRAFT_02732at 318.516 kb on + strandat 318.524 kb on + strandat 318.684 kb on - strand, within H281DRAFT_02733at 318.887 kb on + strand, within H281DRAFT_02734at 318.888 kb on - strand, within H281DRAFT_02734at 319.151 kb on + strandat 319.768 kb on + strand, within H281DRAFT_02735at 319.847 kb on + strand, within H281DRAFT_02735

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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318,049 - H281DRAFT_02732 0.25 +0.3
318,516 + +0.1
318,524 + -0.4
318,684 - H281DRAFT_02733 0.83 +1.2
318,887 + H281DRAFT_02734 0.48 +0.3
318,888 - H281DRAFT_02734 0.48 +0.6
319,151 + +0.5
319,768 + H281DRAFT_02735 0.59 +0.3
319,847 + H281DRAFT_02735 0.67 -0.8

Or see this region's nucleotide sequence