Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00566

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00565 and H281DRAFT_00566 overlap by 8 nucleotidesH281DRAFT_00566 and H281DRAFT_00567 are separated by 95 nucleotides H281DRAFT_00565: H281DRAFT_00565 - NTE family protein, at 635,646 to 636,683 _00565 H281DRAFT_00566: H281DRAFT_00566 - hypothetical protein, at 636,676 to 636,900 _00566 H281DRAFT_00567: H281DRAFT_00567 - glutamyl-tRNA synthetase, at 636,996 to 638,405 _00567 Position (kb) 636 637Strain fitness (log2 ratio) -1 0 1at 635.797 kb on + strand, within H281DRAFT_00565at 635.801 kb on + strand, within H281DRAFT_00565at 635.812 kb on + strand, within H281DRAFT_00565at 635.904 kb on - strand, within H281DRAFT_00565at 635.983 kb on + strand, within H281DRAFT_00565at 635.983 kb on + strand, within H281DRAFT_00565at 635.984 kb on - strand, within H281DRAFT_00565at 635.984 kb on - strand, within H281DRAFT_00565at 636.057 kb on - strandat 636.167 kb on - strand, within H281DRAFT_00565at 636.683 kb on + strandat 636.683 kb on + strandat 636.684 kb on - strandat 636.684 kb on - strandat 636.703 kb on + strand, within H281DRAFT_00566at 636.756 kb on - strand, within H281DRAFT_00566at 636.756 kb on - strand, within H281DRAFT_00566at 636.824 kb on - strand, within H281DRAFT_00566at 636.866 kb on + strand, within H281DRAFT_00566

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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635,797 + H281DRAFT_00565 0.15 -0.1
635,801 + H281DRAFT_00565 0.15 +0.4
635,812 + H281DRAFT_00565 0.16 -0.4
635,904 - H281DRAFT_00565 0.25 -0.3
635,983 + H281DRAFT_00565 0.32 +0.1
635,983 + H281DRAFT_00565 0.32 +0.5
635,984 - H281DRAFT_00565 0.33 -0.7
635,984 - H281DRAFT_00565 0.33 -0.1
636,057 - -1.0
636,167 - H281DRAFT_00565 0.50 -0.4
636,683 + +0.3
636,683 + +0.1
636,684 - +0.2
636,684 - +0.3
636,703 + H281DRAFT_00566 0.12 +0.3
636,756 - H281DRAFT_00566 0.36 +0.3
636,756 - H281DRAFT_00566 0.36 +0.9
636,824 - H281DRAFT_00566 0.66 +0.8
636,866 + H281DRAFT_00566 0.84 +0.2

Or see this region's nucleotide sequence