Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00022

Experiment: L-Glutamic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00020 and H281DRAFT_00021 are separated by 198 nucleotidesH281DRAFT_00021 and H281DRAFT_00022 are separated by 386 nucleotidesH281DRAFT_00022 and H281DRAFT_00023 are separated by 329 nucleotides H281DRAFT_00020: H281DRAFT_00020 - Glutathione S-transferase, at 21,651 to 22,349 _00020 H281DRAFT_00021: H281DRAFT_00021 - hypothetical protein, at 22,548 to 22,817 _00021 H281DRAFT_00022: H281DRAFT_00022 - Transposase IS66 family protein, at 23,204 to 23,734 _00022 H281DRAFT_00023: H281DRAFT_00023 - Glutathione S-transferase, at 24,064 to 24,765 _00023 Position (kb) 23 24Strain fitness (log2 ratio) -1 0 1 2at 22.302 kb on + strandat 22.407 kb on + strandat 22.436 kb on + strandat 22.441 kb on + strandat 22.441 kb on + strandat 22.457 kb on - strandat 22.530 kb on + strandat 22.542 kb on + strandat 22.543 kb on - strandat 22.554 kb on - strandat 22.698 kb on - strand, within H281DRAFT_00021at 22.698 kb on - strand, within H281DRAFT_00021at 22.754 kb on + strand, within H281DRAFT_00021at 22.754 kb on + strandat 22.763 kb on + strand, within H281DRAFT_00021at 22.781 kb on + strand, within H281DRAFT_00021at 22.811 kb on - strandat 22.863 kb on + strandat 22.864 kb on - strandat 22.945 kb on + strandat 23.036 kb on + strandat 23.037 kb on - strandat 23.207 kb on + strandat 23.394 kb on + strand, within H281DRAFT_00022at 23.395 kb on - strand, within H281DRAFT_00022at 23.422 kb on + strand, within H281DRAFT_00022at 23.463 kb on - strand, within H281DRAFT_00022at 23.463 kb on - strand, within H281DRAFT_00022at 23.660 kb on - strand, within H281DRAFT_00022at 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.682 kb on + strandat 23.683 kb on - strandat 23.683 kb on - strandat 23.683 kb on - strandat 23.733 kb on - strandat 23.840 kb on - strandat 24.156 kb on - strand, within H281DRAFT_00023at 24.479 kb on - strand, within H281DRAFT_00023at 24.502 kb on - strand, within H281DRAFT_00023at 24.513 kb on - strand, within H281DRAFT_00023

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
remove
22,302 + +0.3
22,407 + +0.3
22,436 + -0.2
22,441 + +0.1
22,441 + -1.5
22,457 - +2.0
22,530 + +0.3
22,542 + -0.6
22,543 - +0.4
22,554 - -0.2
22,698 - H281DRAFT_00021 0.56 +0.5
22,698 - H281DRAFT_00021 0.56 +0.1
22,754 + H281DRAFT_00021 0.76 +0.8
22,754 + +0.6
22,763 + H281DRAFT_00021 0.80 +0.2
22,781 + H281DRAFT_00021 0.86 +0.9
22,811 - +0.1
22,863 + +0.6
22,864 - +0.5
22,945 + -0.1
23,036 + +0.3
23,037 - +0.1
23,207 + -0.8
23,394 + H281DRAFT_00022 0.36 +0.2
23,395 - H281DRAFT_00022 0.36 +1.0
23,422 + H281DRAFT_00022 0.41 +0.1
23,463 - H281DRAFT_00022 0.49 +0.3
23,463 - H281DRAFT_00022 0.49 +1.0
23,660 - H281DRAFT_00022 0.86 +0.9
23,682 + -0.5
23,682 + +0.2
23,682 + +0.0
23,682 + -0.5
23,682 + -1.0
23,682 + -0.2
23,683 - +0.6
23,683 - +0.2
23,683 - -0.3
23,733 - +0.2
23,840 - -0.0
24,156 - H281DRAFT_00023 0.13 -0.2
24,479 - H281DRAFT_00023 0.59 +0.9
24,502 - H281DRAFT_00023 0.62 +0.2
24,513 - H281DRAFT_00023 0.64 +1.5

Or see this region's nucleotide sequence