Experiment: succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_974 and HP15_975 are separated by 696 nucleotides HP15_975 and HP15_976 are separated by 104 nucleotides
HP15_974: HP15_974 - hypothetical protein, at 984,601 to 984,933
_974
HP15_975: HP15_975 - hypothetical protein, at 985,630 to 985,800
_975
HP15_976: HP15_976 - acetyltransferase, GNAT family protein-like protein, at 985,905 to 986,369
_976
Position (kb) 985
986 Strain fitness (log2 ratio) -2
-1
0
1
2 at 984.651 kb on - strand, within HP15_974 at 984.734 kb on + strand, within HP15_974 at 984.787 kb on + strand, within HP15_974 at 984.952 kb on + strand at 984.990 kb on + strand at 985.055 kb on + strand at 985.063 kb on - strand at 985.132 kb on + strand at 985.132 kb on + strand at 985.132 kb on + strand at 985.151 kb on - strand at 985.178 kb on - strand at 985.255 kb on - strand at 985.363 kb on + strand at 985.526 kb on + strand at 985.668 kb on - strand, within HP15_975 at 985.695 kb on + strand, within HP15_975 at 985.783 kb on - strand, within HP15_975 at 985.797 kb on + strand at 985.882 kb on - strand at 985.889 kb on - strand at 986.012 kb on + strand, within HP15_976 at 986.036 kb on - strand, within HP15_976 at 986.121 kb on - strand, within HP15_976 at 986.166 kb on - strand, within HP15_976 at 986.187 kb on + strand, within HP15_976 at 986.192 kb on + strand, within HP15_976 at 986.200 kb on - strand, within HP15_976 at 986.216 kb on + strand, within HP15_976 at 986.337 kb on + strand at 986.410 kb on - strand at 986.494 kb on - strand at 986.594 kb on + strand at 986.602 kb on + strand at 986.602 kb on - strand at 986.701 kb on - strand at 986.706 kb on + strand at 986.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate remove 984,651 - HP15_974 0.15 +0.2 984,734 + HP15_974 0.40 -0.6 984,787 + HP15_974 0.56 +1.3 984,952 + +1.1 984,990 + -0.7 985,055 + -0.3 985,063 - -1.4 985,132 + -0.1 985,132 + +1.2 985,132 + -0.5 985,151 - -0.2 985,178 - +0.1 985,255 - -0.4 985,363 + +0.2 985,526 + -0.1 985,668 - HP15_975 0.22 -0.7 985,695 + HP15_975 0.38 -1.9 985,783 - HP15_975 0.89 -0.6 985,797 + +0.3 985,882 - -0.7 985,889 - -0.9 986,012 + HP15_976 0.23 -0.2 986,036 - HP15_976 0.28 +1.6 986,121 - HP15_976 0.46 +1.0 986,166 - HP15_976 0.56 -0.4 986,187 + HP15_976 0.61 +0.6 986,192 + HP15_976 0.62 +1.1 986,200 - HP15_976 0.63 -0.0 986,216 + HP15_976 0.67 +1.0 986,337 + -0.1 986,410 - +0.8 986,494 - -0.1 986,594 + +2.5 986,602 + +0.7 986,602 - +0.3 986,701 - +1.2 986,706 + +1.0 986,714 - +0.1
Or see this region's nucleotide sequence