Experiment: succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_81 and HP15_82 are separated by 50 nucleotides HP15_82 and HP15_83 are separated by 510 nucleotides HP15_83 and HP15_84 are separated by 71 nucleotides HP15_84 and HP15_85 are separated by 57 nucleotides
HP15_81: HP15_81 - transcriptional regulator, Cro/CI family protein-like protein, at 90,081 to 90,260
_81
HP15_82: HP15_82 - hypothetical protein, at 90,311 to 90,448
_82
HP15_83: HP15_83 - electron transport protein SCO1/SenC, at 90,959 to 91,531
_83
HP15_84: HP15_84 - conserved hypothetical protein, at 91,603 to 91,959
_84
HP15_85: HP15_85 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 92,017 to 92,715
_85
Position (kb) 90
91
92 Strain fitness (log2 ratio) -1
0
1
2 at 90.270 kb on - strand at 90.386 kb on - strand, within HP15_82 at 90.407 kb on - strand, within HP15_82 at 90.410 kb on + strand, within HP15_82 at 90.428 kb on + strand, within HP15_82 at 90.447 kb on + strand at 90.447 kb on + strand at 90.453 kb on - strand at 90.453 kb on - strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.483 kb on + strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.491 kb on - strand at 90.518 kb on - strand at 90.562 kb on - strand at 90.594 kb on - strand at 90.652 kb on - strand at 90.659 kb on - strand at 90.802 kb on + strand at 90.802 kb on + strand at 90.858 kb on - strand at 90.897 kb on - strand at 90.941 kb on + strand at 90.989 kb on + strand at 91.044 kb on - strand, within HP15_83 at 91.044 kb on - strand, within HP15_83 at 91.079 kb on + strand, within HP15_83 at 91.144 kb on + strand, within HP15_83 at 91.144 kb on + strand, within HP15_83 at 91.152 kb on - strand, within HP15_83 at 91.159 kb on + strand, within HP15_83 at 91.160 kb on - strand, within HP15_83 at 91.167 kb on - strand, within HP15_83 at 91.233 kb on - strand, within HP15_83 at 91.238 kb on + strand, within HP15_83 at 91.272 kb on - strand, within HP15_83 at 91.564 kb on + strand at 91.572 kb on - strand at 91.597 kb on - strand at 91.627 kb on + strand at 91.707 kb on + strand, within HP15_84 at 91.741 kb on + strand, within HP15_84 at 91.744 kb on - strand, within HP15_84 at 91.749 kb on - strand, within HP15_84 at 91.756 kb on + strand, within HP15_84 at 91.756 kb on + strand, within HP15_84 at 91.804 kb on + strand, within HP15_84 at 91.820 kb on - strand, within HP15_84 at 91.892 kb on + strand, within HP15_84 at 91.969 kb on - strand at 92.159 kb on - strand, within HP15_85 at 92.272 kb on + strand, within HP15_85 at 92.319 kb on + strand, within HP15_85 at 92.360 kb on + strand, within HP15_85 at 92.368 kb on - strand, within HP15_85 at 92.368 kb on - strand, within HP15_85 at 92.520 kb on + strand, within HP15_85 at 92.520 kb on + strand, within HP15_85
Per-strain Table
Position Strand Gene LocusTag Fraction succinate remove 90,270 - -0.1 90,386 - HP15_82 0.54 -0.1 90,407 - HP15_82 0.70 -0.4 90,410 + HP15_82 0.72 -0.8 90,428 + HP15_82 0.85 +0.7 90,447 + +1.2 90,447 + +0.6 90,453 - +0.3 90,453 - -0.4 90,483 + -0.4 90,483 + -0.3 90,483 + +1.1 90,483 + +1.5 90,483 + +1.8 90,483 + +1.4 90,483 + -1.1 90,483 + -1.2 90,491 - -0.1 90,491 - -0.6 90,491 - -0.2 90,491 - +0.6 90,491 - +2.1 90,491 - -0.3 90,518 - -0.4 90,562 - +0.2 90,594 - +0.8 90,652 - +0.5 90,659 - -0.2 90,802 + -0.1 90,802 + +1.2 90,858 - +0.9 90,897 - -1.5 90,941 + -0.4 90,989 + +1.5 91,044 - HP15_83 0.15 -0.4 91,044 - HP15_83 0.15 -0.6 91,079 + HP15_83 0.21 -0.8 91,144 + HP15_83 0.32 +1.2 91,144 + HP15_83 0.32 -0.9 91,152 - HP15_83 0.34 +0.9 91,159 + HP15_83 0.35 +0.3 91,160 - HP15_83 0.35 -0.6 91,167 - HP15_83 0.36 +0.0 91,233 - HP15_83 0.48 -0.4 91,238 + HP15_83 0.49 -0.3 91,272 - HP15_83 0.55 +0.2 91,564 + -1.6 91,572 - +0.5 91,597 - +0.8 91,627 + +1.5 91,707 + HP15_84 0.29 -1.1 91,741 + HP15_84 0.39 -1.2 91,744 - HP15_84 0.39 +1.1 91,749 - HP15_84 0.41 +0.2 91,756 + HP15_84 0.43 -0.1 91,756 + HP15_84 0.43 -1.1 91,804 + HP15_84 0.56 +0.5 91,820 - HP15_84 0.61 +0.1 91,892 + HP15_84 0.81 +1.0 91,969 - -0.1 92,159 - HP15_85 0.20 +1.4 92,272 + HP15_85 0.36 +0.7 92,319 + HP15_85 0.43 +1.5 92,360 + HP15_85 0.49 -0.4 92,368 - HP15_85 0.50 -1.0 92,368 - HP15_85 0.50 +0.4 92,520 + HP15_85 0.72 +0.4 92,520 + HP15_85 0.72 +1.2
Or see this region's nucleotide sequence