Experiment: succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3568 and HP15_3569 are separated by 191 nucleotides HP15_3569 and HP15_3570 are separated by 44 nucleotides
HP15_3568: HP15_3568 - beta-lactamase domain protein, at 3,758,597 to 3,760,234
_3568
HP15_3569: HP15_3569 - succinylglutamate desuccinylase/aspartoacylase, at 3,760,426 to 3,761,817
_3569
HP15_3570: HP15_3570 - membrane protein containing DUF6, transmembrane, at 3,761,862 to 3,762,830
_3570
Position (kb)
3760
3761
3762 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3759.501 kb on - strand, within HP15_3568 at 3759.558 kb on - strand, within HP15_3568 at 3759.575 kb on - strand, within HP15_3568 at 3759.625 kb on - strand, within HP15_3568 at 3759.625 kb on - strand, within HP15_3568 at 3759.759 kb on - strand, within HP15_3568 at 3759.765 kb on - strand, within HP15_3568 at 3759.778 kb on - strand, within HP15_3568 at 3759.779 kb on + strand, within HP15_3568 at 3759.801 kb on + strand, within HP15_3568 at 3759.867 kb on - strand, within HP15_3568 at 3759.868 kb on + strand, within HP15_3568 at 3759.870 kb on + strand, within HP15_3568 at 3759.870 kb on + strand, within HP15_3568 at 3759.870 kb on + strand, within HP15_3568 at 3759.870 kb on + strand, within HP15_3568 at 3759.876 kb on - strand, within HP15_3568 at 3759.876 kb on - strand, within HP15_3568 at 3759.878 kb on - strand, within HP15_3568 at 3759.910 kb on + strand, within HP15_3568 at 3759.910 kb on + strand, within HP15_3568 at 3759.954 kb on - strand, within HP15_3568 at 3760.012 kb on + strand, within HP15_3568 at 3760.038 kb on + strand, within HP15_3568 at 3760.206 kb on + strand at 3760.305 kb on - strand at 3760.352 kb on - strand at 3760.386 kb on + strand at 3760.394 kb on - strand at 3760.440 kb on + strand at 3760.566 kb on + strand, within HP15_3569 at 3760.685 kb on + strand, within HP15_3569 at 3760.747 kb on + strand, within HP15_3569 at 3760.790 kb on + strand, within HP15_3569 at 3760.872 kb on - strand, within HP15_3569 at 3760.873 kb on - strand, within HP15_3569 at 3760.909 kb on + strand, within HP15_3569 at 3760.922 kb on - strand, within HP15_3569 at 3760.947 kb on + strand, within HP15_3569 at 3760.947 kb on + strand, within HP15_3569 at 3760.955 kb on - strand, within HP15_3569 at 3760.991 kb on + strand, within HP15_3569 at 3760.999 kb on - strand, within HP15_3569 at 3761.005 kb on - strand, within HP15_3569 at 3761.041 kb on + strand, within HP15_3569 at 3761.093 kb on - strand, within HP15_3569 at 3761.330 kb on + strand, within HP15_3569 at 3761.365 kb on - strand, within HP15_3569 at 3761.487 kb on - strand, within HP15_3569 at 3761.502 kb on - strand, within HP15_3569 at 3761.511 kb on - strand, within HP15_3569 at 3761.593 kb on + strand, within HP15_3569 at 3761.688 kb on + strand at 3761.744 kb on + strand at 3761.849 kb on - strand at 3761.854 kb on - strand at 3761.854 kb on - strand at 3761.856 kb on + strand at 3761.906 kb on + strand at 3761.906 kb on + strand at 3762.003 kb on + strand, within HP15_3570 at 3762.021 kb on - strand, within HP15_3570 at 3762.131 kb on + strand, within HP15_3570 at 3762.139 kb on - strand, within HP15_3570 at 3762.178 kb on + strand, within HP15_3570 at 3762.183 kb on + strand, within HP15_3570 at 3762.191 kb on - strand, within HP15_3570 at 3762.191 kb on - strand, within HP15_3570 at 3762.335 kb on - strand, within HP15_3570 at 3762.378 kb on + strand, within HP15_3570 at 3762.378 kb on + strand, within HP15_3570 at 3762.590 kb on - strand, within HP15_3570 at 3762.627 kb on - strand, within HP15_3570 at 3762.629 kb on + strand, within HP15_3570 at 3762.661 kb on - strand, within HP15_3570 at 3762.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate remove 3,759,501 - HP15_3568 0.55 +0.9 3,759,558 - HP15_3568 0.59 -1.9 3,759,575 - HP15_3568 0.60 +0.8 3,759,625 - HP15_3568 0.63 +0.1 3,759,625 - HP15_3568 0.63 +0.9 3,759,759 - HP15_3568 0.71 +0.2 3,759,765 - HP15_3568 0.71 -0.1 3,759,778 - HP15_3568 0.72 -0.0 3,759,779 + HP15_3568 0.72 +1.0 3,759,801 + HP15_3568 0.74 +2.1 3,759,867 - HP15_3568 0.78 +1.0 3,759,868 + HP15_3568 0.78 +1.2 3,759,870 + HP15_3568 0.78 +1.1 3,759,870 + HP15_3568 0.78 -0.7 3,759,870 + HP15_3568 0.78 +1.3 3,759,870 + HP15_3568 0.78 +1.6 3,759,876 - HP15_3568 0.78 +1.4 3,759,876 - HP15_3568 0.78 -0.5 3,759,878 - HP15_3568 0.78 -0.1 3,759,910 + HP15_3568 0.80 +0.6 3,759,910 + HP15_3568 0.80 +0.0 3,759,954 - HP15_3568 0.83 +0.9 3,760,012 + HP15_3568 0.86 +0.6 3,760,038 + HP15_3568 0.88 +0.4 3,760,206 + +0.1 3,760,305 - +1.2 3,760,352 - -0.4 3,760,386 + -0.6 3,760,394 - +0.5 3,760,440 + -0.1 3,760,566 + HP15_3569 0.10 +1.6 3,760,685 + HP15_3569 0.19 +1.6 3,760,747 + HP15_3569 0.23 +0.3 3,760,790 + HP15_3569 0.26 -0.5 3,760,872 - HP15_3569 0.32 +0.0 3,760,873 - HP15_3569 0.32 -0.6 3,760,909 + HP15_3569 0.35 +1.3 3,760,922 - HP15_3569 0.36 +1.1 3,760,947 + HP15_3569 0.37 +2.2 3,760,947 + HP15_3569 0.37 -0.3 3,760,955 - HP15_3569 0.38 +1.1 3,760,991 + HP15_3569 0.41 +0.8 3,760,999 - HP15_3569 0.41 +0.7 3,761,005 - HP15_3569 0.42 +0.0 3,761,041 + HP15_3569 0.44 +1.5 3,761,093 - HP15_3569 0.48 +1.4 3,761,330 + HP15_3569 0.65 -0.1 3,761,365 - HP15_3569 0.67 -0.3 3,761,487 - HP15_3569 0.76 +1.6 3,761,502 - HP15_3569 0.77 +1.0 3,761,511 - HP15_3569 0.78 +0.6 3,761,593 + HP15_3569 0.84 +0.2 3,761,688 + +1.9 3,761,744 + -0.2 3,761,849 - -0.2 3,761,854 - +0.9 3,761,854 - +0.2 3,761,856 + +0.5 3,761,906 + +0.3 3,761,906 + +1.2 3,762,003 + HP15_3570 0.15 -0.2 3,762,021 - HP15_3570 0.16 +0.0 3,762,131 + HP15_3570 0.28 -0.8 3,762,139 - HP15_3570 0.29 -0.1 3,762,178 + HP15_3570 0.33 -0.4 3,762,183 + HP15_3570 0.33 -0.4 3,762,191 - HP15_3570 0.34 -1.4 3,762,191 - HP15_3570 0.34 -0.6 3,762,335 - HP15_3570 0.49 -0.5 3,762,378 + HP15_3570 0.53 -0.4 3,762,378 + HP15_3570 0.53 -0.3 3,762,590 - HP15_3570 0.75 +1.0 3,762,627 - HP15_3570 0.79 +0.7 3,762,629 + HP15_3570 0.79 +0.7 3,762,661 - HP15_3570 0.82 +0.5 3,762,777 + +0.6
Or see this region's nucleotide sequence