Strain Fitness in Marinobacter adhaerens HP15 around HP15_3569

Experiment: succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3568 and HP15_3569 are separated by 191 nucleotidesHP15_3569 and HP15_3570 are separated by 44 nucleotides HP15_3568: HP15_3568 - beta-lactamase domain protein, at 3,758,597 to 3,760,234 _3568 HP15_3569: HP15_3569 - succinylglutamate desuccinylase/aspartoacylase, at 3,760,426 to 3,761,817 _3569 HP15_3570: HP15_3570 - membrane protein containing DUF6, transmembrane, at 3,761,862 to 3,762,830 _3570 Position (kb) 3760 3761 3762Strain fitness (log2 ratio) -2 -1 0 1 2at 3759.501 kb on - strand, within HP15_3568at 3759.558 kb on - strand, within HP15_3568at 3759.575 kb on - strand, within HP15_3568at 3759.625 kb on - strand, within HP15_3568at 3759.625 kb on - strand, within HP15_3568at 3759.759 kb on - strand, within HP15_3568at 3759.765 kb on - strand, within HP15_3568at 3759.778 kb on - strand, within HP15_3568at 3759.779 kb on + strand, within HP15_3568at 3759.801 kb on + strand, within HP15_3568at 3759.867 kb on - strand, within HP15_3568at 3759.868 kb on + strand, within HP15_3568at 3759.870 kb on + strand, within HP15_3568at 3759.870 kb on + strand, within HP15_3568at 3759.870 kb on + strand, within HP15_3568at 3759.870 kb on + strand, within HP15_3568at 3759.876 kb on - strand, within HP15_3568at 3759.876 kb on - strand, within HP15_3568at 3759.878 kb on - strand, within HP15_3568at 3759.910 kb on + strand, within HP15_3568at 3759.910 kb on + strand, within HP15_3568at 3759.954 kb on - strand, within HP15_3568at 3760.012 kb on + strand, within HP15_3568at 3760.038 kb on + strand, within HP15_3568at 3760.206 kb on + strandat 3760.305 kb on - strandat 3760.352 kb on - strandat 3760.386 kb on + strandat 3760.394 kb on - strandat 3760.440 kb on + strandat 3760.566 kb on + strand, within HP15_3569at 3760.685 kb on + strand, within HP15_3569at 3760.747 kb on + strand, within HP15_3569at 3760.790 kb on + strand, within HP15_3569at 3760.872 kb on - strand, within HP15_3569at 3760.873 kb on - strand, within HP15_3569at 3760.909 kb on + strand, within HP15_3569at 3760.922 kb on - strand, within HP15_3569at 3760.947 kb on + strand, within HP15_3569at 3760.947 kb on + strand, within HP15_3569at 3760.955 kb on - strand, within HP15_3569at 3760.991 kb on + strand, within HP15_3569at 3760.999 kb on - strand, within HP15_3569at 3761.005 kb on - strand, within HP15_3569at 3761.041 kb on + strand, within HP15_3569at 3761.093 kb on - strand, within HP15_3569at 3761.330 kb on + strand, within HP15_3569at 3761.365 kb on - strand, within HP15_3569at 3761.487 kb on - strand, within HP15_3569at 3761.502 kb on - strand, within HP15_3569at 3761.511 kb on - strand, within HP15_3569at 3761.593 kb on + strand, within HP15_3569at 3761.688 kb on + strandat 3761.744 kb on + strandat 3761.849 kb on - strandat 3761.854 kb on - strandat 3761.854 kb on - strandat 3761.856 kb on + strandat 3761.906 kb on + strandat 3761.906 kb on + strandat 3762.003 kb on + strand, within HP15_3570at 3762.021 kb on - strand, within HP15_3570at 3762.131 kb on + strand, within HP15_3570at 3762.139 kb on - strand, within HP15_3570at 3762.178 kb on + strand, within HP15_3570at 3762.183 kb on + strand, within HP15_3570at 3762.191 kb on - strand, within HP15_3570at 3762.191 kb on - strand, within HP15_3570at 3762.335 kb on - strand, within HP15_3570at 3762.378 kb on + strand, within HP15_3570at 3762.378 kb on + strand, within HP15_3570at 3762.590 kb on - strand, within HP15_3570at 3762.627 kb on - strand, within HP15_3570at 3762.629 kb on + strand, within HP15_3570at 3762.661 kb on - strand, within HP15_3570at 3762.777 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate
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3,759,501 - HP15_3568 0.55 +0.9
3,759,558 - HP15_3568 0.59 -1.9
3,759,575 - HP15_3568 0.60 +0.8
3,759,625 - HP15_3568 0.63 +0.1
3,759,625 - HP15_3568 0.63 +0.9
3,759,759 - HP15_3568 0.71 +0.2
3,759,765 - HP15_3568 0.71 -0.1
3,759,778 - HP15_3568 0.72 -0.0
3,759,779 + HP15_3568 0.72 +1.0
3,759,801 + HP15_3568 0.74 +2.1
3,759,867 - HP15_3568 0.78 +1.0
3,759,868 + HP15_3568 0.78 +1.2
3,759,870 + HP15_3568 0.78 +1.1
3,759,870 + HP15_3568 0.78 -0.7
3,759,870 + HP15_3568 0.78 +1.3
3,759,870 + HP15_3568 0.78 +1.6
3,759,876 - HP15_3568 0.78 +1.4
3,759,876 - HP15_3568 0.78 -0.5
3,759,878 - HP15_3568 0.78 -0.1
3,759,910 + HP15_3568 0.80 +0.6
3,759,910 + HP15_3568 0.80 +0.0
3,759,954 - HP15_3568 0.83 +0.9
3,760,012 + HP15_3568 0.86 +0.6
3,760,038 + HP15_3568 0.88 +0.4
3,760,206 + +0.1
3,760,305 - +1.2
3,760,352 - -0.4
3,760,386 + -0.6
3,760,394 - +0.5
3,760,440 + -0.1
3,760,566 + HP15_3569 0.10 +1.6
3,760,685 + HP15_3569 0.19 +1.6
3,760,747 + HP15_3569 0.23 +0.3
3,760,790 + HP15_3569 0.26 -0.5
3,760,872 - HP15_3569 0.32 +0.0
3,760,873 - HP15_3569 0.32 -0.6
3,760,909 + HP15_3569 0.35 +1.3
3,760,922 - HP15_3569 0.36 +1.1
3,760,947 + HP15_3569 0.37 +2.2
3,760,947 + HP15_3569 0.37 -0.3
3,760,955 - HP15_3569 0.38 +1.1
3,760,991 + HP15_3569 0.41 +0.8
3,760,999 - HP15_3569 0.41 +0.7
3,761,005 - HP15_3569 0.42 +0.0
3,761,041 + HP15_3569 0.44 +1.5
3,761,093 - HP15_3569 0.48 +1.4
3,761,330 + HP15_3569 0.65 -0.1
3,761,365 - HP15_3569 0.67 -0.3
3,761,487 - HP15_3569 0.76 +1.6
3,761,502 - HP15_3569 0.77 +1.0
3,761,511 - HP15_3569 0.78 +0.6
3,761,593 + HP15_3569 0.84 +0.2
3,761,688 + +1.9
3,761,744 + -0.2
3,761,849 - -0.2
3,761,854 - +0.9
3,761,854 - +0.2
3,761,856 + +0.5
3,761,906 + +0.3
3,761,906 + +1.2
3,762,003 + HP15_3570 0.15 -0.2
3,762,021 - HP15_3570 0.16 +0.0
3,762,131 + HP15_3570 0.28 -0.8
3,762,139 - HP15_3570 0.29 -0.1
3,762,178 + HP15_3570 0.33 -0.4
3,762,183 + HP15_3570 0.33 -0.4
3,762,191 - HP15_3570 0.34 -1.4
3,762,191 - HP15_3570 0.34 -0.6
3,762,335 - HP15_3570 0.49 -0.5
3,762,378 + HP15_3570 0.53 -0.4
3,762,378 + HP15_3570 0.53 -0.3
3,762,590 - HP15_3570 0.75 +1.0
3,762,627 - HP15_3570 0.79 +0.7
3,762,629 + HP15_3570 0.79 +0.7
3,762,661 - HP15_3570 0.82 +0.5
3,762,777 + +0.6

Or see this region's nucleotide sequence