Experiment: succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_228 and HP15_227 overlap by 2 nucleotides HP15_227 and HP15_229 are separated by 256 nucleotides HP15_229 and HP15_230 are separated by 64 nucleotides HP15_230 and HP15_231 are separated by 1 nucleotides HP15_231 and HP15_232 are separated by 23 nucleotides
HP15_228: HP15_228 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 213,124 to 214,566
_228
HP15_227: HP15_227 - hypothetical protein, at 214,565 to 214,669
_227
HP15_229: HP15_229 - thioredoxin, at 214,926 to 215,270
_229
HP15_230: HP15_230 - molybdenum cofactor biosynthesis protein E, at 215,335 to 215,781
_230
HP15_231: HP15_231 - thiamineS, at 215,783 to 216,022
_231
HP15_232: HP15_232 - molybdenum cofactor synthesis domain protein, at 216,046 to 217,260
_232
Position (kb) 215
216 Strain fitness (log2 ratio) -1
0
1 at 214.406 kb on + strand, within HP15_228 at 214.414 kb on - strand, within HP15_228 at 214.414 kb on - strand, within HP15_228 at 214.446 kb on - strand at 214.651 kb on - strand, within HP15_227 at 214.743 kb on + strand at 214.767 kb on - strand at 214.778 kb on + strand at 214.802 kb on + strand at 214.871 kb on - strand at 215.032 kb on - strand, within HP15_229 at 215.397 kb on - strand, within HP15_230 at 215.441 kb on - strand, within HP15_230 at 215.482 kb on - strand, within HP15_230 at 215.486 kb on + strand, within HP15_230 at 215.500 kb on + strand, within HP15_230 at 215.523 kb on + strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.575 kb on - strand, within HP15_230 at 215.575 kb on - strand, within HP15_230 at 215.671 kb on + strand, within HP15_230 at 215.674 kb on - strand, within HP15_230 at 215.674 kb on - strand, within HP15_230 at 215.720 kb on + strand, within HP15_230 at 215.897 kb on - strand, within HP15_231 at 216.049 kb on + strand at 216.049 kb on + strand at 216.049 kb on + strand at 216.312 kb on - strand, within HP15_232 at 216.362 kb on - strand, within HP15_232 at 216.428 kb on + strand, within HP15_232 at 216.487 kb on - strand, within HP15_232 at 216.534 kb on - strand, within HP15_232 at 216.539 kb on - strand, within HP15_232 at 216.593 kb on + strand, within HP15_232 at 216.642 kb on + strand, within HP15_232 at 216.650 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232 at 216.677 kb on - strand, within HP15_232
Per-strain Table
Position Strand Gene LocusTag Fraction succinate remove 214,406 + HP15_228 0.89 -0.1 214,414 - HP15_228 0.89 -1.4 214,414 - HP15_228 0.89 -0.1 214,446 - +0.1 214,651 - HP15_227 0.82 -0.2 214,743 + +0.8 214,767 - -0.3 214,778 + -0.4 214,802 + -0.2 214,871 - -1.7 215,032 - HP15_229 0.31 -1.4 215,397 - HP15_230 0.14 +0.6 215,441 - HP15_230 0.24 +0.1 215,482 - HP15_230 0.33 +0.4 215,486 + HP15_230 0.34 -0.3 215,500 + HP15_230 0.37 -0.0 215,523 + HP15_230 0.42 -0.7 215,531 - HP15_230 0.44 -0.5 215,531 - HP15_230 0.44 +0.3 215,531 - HP15_230 0.44 -1.0 215,575 - HP15_230 0.54 +1.2 215,575 - HP15_230 0.54 -0.7 215,671 + HP15_230 0.75 -0.3 215,674 - HP15_230 0.76 +0.9 215,674 - HP15_230 0.76 +1.1 215,720 + HP15_230 0.86 -0.6 215,897 - HP15_231 0.47 +1.0 216,049 + +0.4 216,049 + -0.1 216,049 + +1.0 216,312 - HP15_232 0.22 +0.2 216,362 - HP15_232 0.26 +0.5 216,428 + HP15_232 0.31 +1.2 216,487 - HP15_232 0.36 -1.5 216,534 - HP15_232 0.40 +0.6 216,539 - HP15_232 0.41 +0.4 216,593 + HP15_232 0.45 +1.5 216,642 + HP15_232 0.49 +1.4 216,650 - HP15_232 0.50 -0.2 216,677 - HP15_232 0.52 -0.0 216,677 - HP15_232 0.52 +1.5 216,677 - HP15_232 0.52 +0.1
Or see this region's nucleotide sequence