Experiment: succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2156 and HP15_2157 are separated by 223 nucleotides HP15_2157 and HP15_2158 are separated by 213 nucleotides
HP15_2156: HP15_2156 - phosphopyruvate hydratase, at 2,261,819 to 2,263,060
_2156
HP15_2157: HP15_2157 - methyl-accepting chemotaxis protein, at 2,263,284 to 2,265,290
_2157
HP15_2158: HP15_2158 - ABC-type sugar transport system, periplasmic component, at 2,265,504 to 2,267,246
_2158
Position (kb)
2263
2264
2265
2266 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2262.539 kb on + strand, within HP15_2156 at 2262.564 kb on + strand, within HP15_2156 at 2262.582 kb on + strand, within HP15_2156 at 2262.715 kb on + strand, within HP15_2156 at 2262.941 kb on - strand at 2263.121 kb on + strand at 2263.458 kb on - strand at 2263.477 kb on - strand at 2263.510 kb on - strand, within HP15_2157 at 2263.552 kb on + strand, within HP15_2157 at 2263.820 kb on - strand, within HP15_2157 at 2263.822 kb on + strand, within HP15_2157 at 2263.842 kb on + strand, within HP15_2157 at 2263.855 kb on - strand, within HP15_2157 at 2263.908 kb on + strand, within HP15_2157 at 2263.921 kb on + strand, within HP15_2157 at 2264.366 kb on + strand, within HP15_2157 at 2264.416 kb on + strand, within HP15_2157 at 2264.424 kb on - strand, within HP15_2157 at 2264.503 kb on + strand, within HP15_2157 at 2264.593 kb on + strand, within HP15_2157 at 2264.745 kb on - strand, within HP15_2157 at 2264.790 kb on - strand, within HP15_2157 at 2264.806 kb on - strand, within HP15_2157 at 2264.840 kb on + strand, within HP15_2157 at 2264.840 kb on + strand, within HP15_2157 at 2264.943 kb on + strand, within HP15_2157 at 2264.946 kb on - strand, within HP15_2157 at 2264.964 kb on + strand, within HP15_2157 at 2265.215 kb on + strand at 2265.354 kb on + strand at 2265.370 kb on + strand at 2265.414 kb on + strand at 2265.429 kb on + strand at 2265.439 kb on + strand at 2265.444 kb on + strand at 2265.612 kb on + strand at 2265.622 kb on - strand at 2265.793 kb on - strand, within HP15_2158 at 2265.803 kb on + strand, within HP15_2158 at 2265.833 kb on + strand, within HP15_2158 at 2265.987 kb on - strand, within HP15_2158 at 2266.152 kb on + strand, within HP15_2158 at 2266.163 kb on + strand, within HP15_2158 at 2266.206 kb on - strand, within HP15_2158 at 2266.206 kb on - strand, within HP15_2158 at 2266.206 kb on - strand, within HP15_2158 at 2266.214 kb on + strand, within HP15_2158 at 2266.244 kb on - strand, within HP15_2158 at 2266.280 kb on - strand, within HP15_2158
Per-strain Table
Position Strand Gene LocusTag Fraction succinate remove 2,262,539 + HP15_2156 0.58 -1.1 2,262,564 + HP15_2156 0.60 +2.8 2,262,582 + HP15_2156 0.61 +1.8 2,262,715 + HP15_2156 0.72 +1.1 2,262,941 - -0.4 2,263,121 + -0.8 2,263,458 - +1.4 2,263,477 - -0.6 2,263,510 - HP15_2157 0.11 +0.8 2,263,552 + HP15_2157 0.13 +0.9 2,263,820 - HP15_2157 0.27 +1.2 2,263,822 + HP15_2157 0.27 +0.1 2,263,842 + HP15_2157 0.28 -0.6 2,263,855 - HP15_2157 0.28 +1.5 2,263,908 + HP15_2157 0.31 +0.9 2,263,921 + HP15_2157 0.32 +0.8 2,264,366 + HP15_2157 0.54 -0.4 2,264,416 + HP15_2157 0.56 -1.4 2,264,424 - HP15_2157 0.57 -0.7 2,264,503 + HP15_2157 0.61 -0.6 2,264,593 + HP15_2157 0.65 +0.2 2,264,745 - HP15_2157 0.73 +1.0 2,264,790 - HP15_2157 0.75 +1.2 2,264,806 - HP15_2157 0.76 +1.0 2,264,840 + HP15_2157 0.78 -0.8 2,264,840 + HP15_2157 0.78 +0.1 2,264,943 + HP15_2157 0.83 +1.5 2,264,946 - HP15_2157 0.83 -0.5 2,264,964 + HP15_2157 0.84 -1.0 2,265,215 + +1.4 2,265,354 + -0.5 2,265,370 + +0.6 2,265,414 + -0.4 2,265,429 + +1.1 2,265,439 + +0.3 2,265,444 + +0.3 2,265,612 + -0.6 2,265,622 - +1.5 2,265,793 - HP15_2158 0.17 -0.1 2,265,803 + HP15_2158 0.17 -0.7 2,265,833 + HP15_2158 0.19 +1.1 2,265,987 - HP15_2158 0.28 -0.8 2,266,152 + HP15_2158 0.37 +0.4 2,266,163 + HP15_2158 0.38 -0.4 2,266,206 - HP15_2158 0.40 -1.2 2,266,206 - HP15_2158 0.40 -0.2 2,266,206 - HP15_2158 0.40 -0.1 2,266,214 + HP15_2158 0.41 +0.1 2,266,244 - HP15_2158 0.42 -0.8 2,266,280 - HP15_2158 0.45 +0.8
Or see this region's nucleotide sequence