Experiment: succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1733 and HP15_1734 are separated by 51 nucleotides HP15_1734 and HP15_1735 are separated by 26 nucleotides HP15_1735 and HP15_1736 are separated by 58 nucleotides HP15_1736 and HP15_1737 are separated by 25 nucleotides
HP15_1733: HP15_1733 - conserved hypothetical protein, at 1,832,443 to 1,832,985
_1733
HP15_1734: HP15_1734 - ABC-type multidrug transport system, ATPase component, at 1,833,037 to 1,833,957
_1734
HP15_1735: HP15_1735 - ABC transporter, permease protein, at 1,833,984 to 1,834,745
_1735
HP15_1736: HP15_1736 - protein containing DUF192, at 1,834,804 to 1,835,259
_1736
HP15_1737: HP15_1737 - enoyl-CoA hydratase/isomerase, at 1,835,285 to 1,836,106
_1737
Position (kb)
1833
1834
1835 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1833.485 kb on + strand, within HP15_1734 at 1833.493 kb on - strand, within HP15_1734 at 1833.613 kb on - strand, within HP15_1734 at 1833.821 kb on - strand, within HP15_1734 at 1833.822 kb on - strand, within HP15_1734 at 1834.259 kb on + strand, within HP15_1735 at 1834.290 kb on + strand, within HP15_1735 at 1834.295 kb on + strand, within HP15_1735 at 1834.390 kb on - strand, within HP15_1735 at 1834.747 kb on - strand at 1834.812 kb on + strand at 1834.919 kb on + strand, within HP15_1736 at 1834.919 kb on + strand, within HP15_1736 at 1835.374 kb on + strand, within HP15_1737 at 1835.382 kb on - strand, within HP15_1737 at 1835.382 kb on - strand, within HP15_1737 at 1835.535 kb on + strand, within HP15_1737 at 1835.536 kb on + strand, within HP15_1737 at 1835.562 kb on + strand, within HP15_1737 at 1835.635 kb on + strand, within HP15_1737 at 1835.640 kb on + strand, within HP15_1737 at 1835.640 kb on + strand, within HP15_1737 at 1835.643 kb on - strand, within HP15_1737 at 1835.648 kb on - strand, within HP15_1737 at 1835.648 kb on - strand, within HP15_1737 at 1835.648 kb on - strand, within HP15_1737 at 1835.704 kb on + strand, within HP15_1737
Per-strain Table
Position Strand Gene LocusTag Fraction succinate remove 1,833,485 + HP15_1734 0.49 -1.7 1,833,493 - HP15_1734 0.50 +0.4 1,833,613 - HP15_1734 0.63 -1.5 1,833,821 - HP15_1734 0.85 -0.5 1,833,822 - HP15_1734 0.85 +0.5 1,834,259 + HP15_1735 0.36 -0.5 1,834,290 + HP15_1735 0.40 +2.3 1,834,295 + HP15_1735 0.41 +1.3 1,834,390 - HP15_1735 0.53 +1.5 1,834,747 - -0.8 1,834,812 + -2.1 1,834,919 + HP15_1736 0.25 -1.3 1,834,919 + HP15_1736 0.25 -0.1 1,835,374 + HP15_1737 0.11 +1.2 1,835,382 - HP15_1737 0.12 -1.4 1,835,382 - HP15_1737 0.12 -0.8 1,835,535 + HP15_1737 0.30 -0.6 1,835,536 + HP15_1737 0.31 -0.6 1,835,562 + HP15_1737 0.34 -0.1 1,835,635 + HP15_1737 0.43 -0.7 1,835,640 + HP15_1737 0.43 -0.6 1,835,640 + HP15_1737 0.43 -1.1 1,835,643 - HP15_1737 0.44 -0.0 1,835,648 - HP15_1737 0.44 +0.2 1,835,648 - HP15_1737 0.44 +0.3 1,835,648 - HP15_1737 0.44 -0.4 1,835,704 + HP15_1737 0.51 +1.4
Or see this region's nucleotide sequence