Strain Fitness in Marinobacter adhaerens HP15 around HP15_1401

Experiment: succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1400 and HP15_1401 are separated by 78 nucleotides HP15_1400: HP15_1400 - fructose-bisphosphate aldolase B, at 1,476,365 to 1,477,429 _1400 HP15_1401: HP15_1401 - shikimate/quinate 5-dehydrogenase, at 1,477,508 to 1,479,619 _1401 Position (kb) 1477 1478 1479 1480Strain fitness (log2 ratio) -2 -1 0 1 2at 1476.525 kb on + strand, within HP15_1400at 1476.526 kb on + strand, within HP15_1400at 1476.533 kb on - strand, within HP15_1400at 1476.791 kb on + strand, within HP15_1400at 1476.814 kb on - strand, within HP15_1400at 1476.928 kb on - strand, within HP15_1400at 1477.012 kb on + strand, within HP15_1400at 1477.034 kb on + strand, within HP15_1400at 1477.096 kb on + strand, within HP15_1400at 1477.216 kb on + strand, within HP15_1400at 1477.238 kb on + strand, within HP15_1400at 1477.269 kb on + strand, within HP15_1400at 1477.270 kb on - strand, within HP15_1400at 1477.392 kb on - strandat 1477.448 kb on - strandat 1477.557 kb on + strandat 1477.577 kb on - strandat 1477.670 kb on + strandat 1477.670 kb on + strandat 1477.670 kb on + strandat 1477.706 kb on + strandat 1478.103 kb on - strand, within HP15_1401at 1478.103 kb on - strand, within HP15_1401at 1478.105 kb on + strand, within HP15_1401at 1478.164 kb on - strand, within HP15_1401at 1478.203 kb on - strand, within HP15_1401at 1478.261 kb on + strand, within HP15_1401at 1478.279 kb on - strand, within HP15_1401at 1478.400 kb on - strand, within HP15_1401at 1478.417 kb on - strand, within HP15_1401at 1478.420 kb on + strand, within HP15_1401at 1478.534 kb on + strand, within HP15_1401at 1478.539 kb on + strand, within HP15_1401at 1478.609 kb on + strand, within HP15_1401at 1478.807 kb on + strand, within HP15_1401at 1478.815 kb on - strand, within HP15_1401at 1478.823 kb on + strand, within HP15_1401at 1478.831 kb on - strand, within HP15_1401at 1478.841 kb on - strand, within HP15_1401at 1478.942 kb on - strand, within HP15_1401at 1478.942 kb on - strand, within HP15_1401at 1478.942 kb on - strand, within HP15_1401at 1478.974 kb on + strand, within HP15_1401at 1479.010 kb on - strand, within HP15_1401at 1479.019 kb on + strand, within HP15_1401at 1479.239 kb on + strand, within HP15_1401at 1479.327 kb on + strand, within HP15_1401at 1479.384 kb on - strand, within HP15_1401at 1479.470 kb on - strandat 1479.503 kb on - strandat 1479.513 kb on + strandat 1479.631 kb on + strandat 1479.805 kb on - strandat 1479.862 kb on + strandat 1480.042 kb on + strandat 1480.164 kb on + strandat 1480.227 kb on + strandat 1480.264 kb on - strandat 1480.383 kb on - strandat 1480.428 kb on - strandat 1480.493 kb on + strandat 1480.496 kb on - strandat 1480.546 kb on - strandat 1480.547 kb on + strandat 1480.548 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate
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1,476,525 + HP15_1400 0.15 +1.5
1,476,526 + HP15_1400 0.15 -0.5
1,476,533 - HP15_1400 0.16 -0.4
1,476,791 + HP15_1400 0.40 +1.7
1,476,814 - HP15_1400 0.42 +0.8
1,476,928 - HP15_1400 0.53 -0.3
1,477,012 + HP15_1400 0.61 -0.7
1,477,034 + HP15_1400 0.63 +0.8
1,477,096 + HP15_1400 0.69 +0.0
1,477,216 + HP15_1400 0.80 -2.3
1,477,238 + HP15_1400 0.82 -0.2
1,477,269 + HP15_1400 0.85 -0.4
1,477,270 - HP15_1400 0.85 +1.3
1,477,392 - +0.7
1,477,448 - -1.3
1,477,557 + +0.4
1,477,577 - -0.5
1,477,670 + -0.5
1,477,670 + -1.2
1,477,670 + -0.5
1,477,706 + -0.4
1,478,103 - HP15_1401 0.28 -0.2
1,478,103 - HP15_1401 0.28 -0.8
1,478,105 + HP15_1401 0.28 -1.0
1,478,164 - HP15_1401 0.31 -1.2
1,478,203 - HP15_1401 0.33 +0.6
1,478,261 + HP15_1401 0.36 -0.5
1,478,279 - HP15_1401 0.37 +1.0
1,478,400 - HP15_1401 0.42 -1.1
1,478,417 - HP15_1401 0.43 -0.1
1,478,420 + HP15_1401 0.43 -0.8
1,478,534 + HP15_1401 0.49 +1.3
1,478,539 + HP15_1401 0.49 +1.2
1,478,609 + HP15_1401 0.52 +1.2
1,478,807 + HP15_1401 0.62 +1.4
1,478,815 - HP15_1401 0.62 -0.1
1,478,823 + HP15_1401 0.62 +0.0
1,478,831 - HP15_1401 0.63 +0.3
1,478,841 - HP15_1401 0.63 +0.9
1,478,942 - HP15_1401 0.68 +0.8
1,478,942 - HP15_1401 0.68 +0.6
1,478,942 - HP15_1401 0.68 -0.3
1,478,974 + HP15_1401 0.69 +0.0
1,479,010 - HP15_1401 0.71 +0.1
1,479,019 + HP15_1401 0.72 +0.2
1,479,239 + HP15_1401 0.82 -0.5
1,479,327 + HP15_1401 0.86 -0.7
1,479,384 - HP15_1401 0.89 +1.1
1,479,470 - +1.5
1,479,503 - -0.5
1,479,513 + -0.5
1,479,631 + +1.0
1,479,805 - -0.3
1,479,862 + -0.8
1,480,042 + -0.8
1,480,164 + +0.8
1,480,227 + -0.6
1,480,264 - -0.3
1,480,383 - +0.4
1,480,428 - -0.8
1,480,493 + -0.2
1,480,496 - +1.1
1,480,546 - -2.1
1,480,547 + -0.2
1,480,548 + +2.4

Or see this region's nucleotide sequence